Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a22
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    43   4e-05
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    42   9e-05
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    40   2e-04
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   2.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   5.0  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   5.0  
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   6.6  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   8.8  

>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = +1

Query: 340 LAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVWT 447
           L   ++ +K IVV TGAGIS  AGIPDFR   G+++
Sbjct: 50  LVSAIRKAKRIVVVTGAGISCDAGIPDFRSSEGLFS 85


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +1

Query: 340 LAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVW 444
           +  L+K +K++VV  GAGISTS GI DFR  NG +
Sbjct: 149 VVNLLKKAKNVVVLVGAGISTSLGILDFRSDNGFY 183


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +1

Query: 340 LAQLVKDSK--HIVVHTGAGISTSAGIPDFRGP 432
           +A L+K+ K   I V  GAGIST+AGIPDFR P
Sbjct: 18  VASLIKEGKVKKICVMVGAGISTAAGIPDFRSP 50


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -3

Query: 497 ASANDTLMVGFLPSF----SKVHTPFGPLKSGIPAEVLMP 390
           A+ NDT M  +LP+     + +  PF P  SGIP    +P
Sbjct: 272 ATVNDTSMEYYLPNAYPHPTGISLPFYPFDSGIPVSPNIP 311


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 491  ANDTLMVGFLPSFSKVHTPFGPLKSGIPAEVLMPA 387
            ANDT + G +P+F     P  PL S    + + PA
Sbjct: 932  ANDTSVAGVMPAFPPPPPPPPPLVSAAGGKFVSPA 966


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 509 FVGCASANDTLMVGFLPSFSKVHTPFGPLKSG 414
           F   +S N T   G  P+F    TPFG   SG
Sbjct: 227 FGNASSTNTTSAFGSTPAFGASTTPFGQNLSG 258


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 488 NDTLMV-GFLPSFSKVHTPFGPLKSGIPAEVLMPAPVWTTICLLSF 354
           +DT++V   +     V  PFG L +G+P  + + A       LLSF
Sbjct: 421 SDTMLVPANMAGIPSVSIPFGTLNNGLPMGIQIMAQYLNDEDLLSF 466


>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -2

Query: 513 GFCGLCISK*YIDGWLFTFLL*SPHSIWPSKVWNTRRSTYASSSVDNNMFTIFHKLSQEY 334
           G+C   I    +DGWLF         I  S ++       + SS D    +I +KL QE+
Sbjct: 14  GYCKKDIVLRNLDGWLFDM-------ITISTIFKLYNQICSLSSTDRKKTSISNKLQQEF 66

Query: 333 TFL 325
             +
Sbjct: 67  CIM 69


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 219 IYLMVLTQIFIEPLFKFKLRIFFYNMD 139
           +Y+ +L  +F+ P+F F   + F N+D
Sbjct: 94  VYMFILG-MFVTPIFSFLYSLLFKNLD 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,669
Number of Sequences: 5004
Number of extensions: 58919
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)