Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a22
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0112 - 11369013-11369193,11369194-11369354,11370281-113703...    49   3e-06
12_01_0509 - 4029739-4029890,4031064-4031208,4031665-4031709,403...    48   5e-06
02_05_0090 - 25742533-25744557                                         28   5.2  

>04_03_0112 -
           11369013-11369193,11369194-11369354,11370281-11370383,
           11370467-11370534,11372340-11372393,11374173-11374251,
           11376054-11376133,11376584-11376692,11376813-11376913,
           11378407-11378526,11379613-11379642,11380591-11380689
          Length = 394

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 43/129 (33%), Positives = 60/129 (46%)
 Frame = +1

Query: 232 MSCNYAEGLSPYENKGILGVPEKFDSNDKLNQKCVLLAQLVKDSKHIVVHTGAGISTSAG 411
           MS  YAE LS  E+ G +G+PE FDS + L++K   LA +V++       +G G+   A 
Sbjct: 1   MSLGYAEKLSYREDVGNVGMPEIFDSPELLHKKIEELAVMVRE------RSGKGV-PGAS 53

Query: 412 IPDFRGPNGVWTLEKEGKKPTINVSFADAQPTKTHMXXXXXXXXXXXXXXVSQNIDGLHL 591
           +P                       F  A PT THM              +SQN+D LHL
Sbjct: 54  LP-----------------------FHRAVPTLTHMALVELEKTGRLKFVISQNVDSLHL 90

Query: 592 KSGVPRKFL 618
           +SG+PR+ L
Sbjct: 91  RSGLPREKL 99


>12_01_0509 -
           4029739-4029890,4031064-4031208,4031665-4031709,
           4031800-4031899,4032013-4032140,4032548-4032712,
           4033033-4033162,4033252-4033412,4034306-4034351,
           4034429-4034494,4034579-4034664,4035811-4035849
          Length = 420

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = +1

Query: 304 DSNDKLNQKCVLLAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVWTLEKEGKKPTINV 483
           DS+    +   LL + +  SK ++V TGAG+ST +GIPD+R PNG ++    G KP  + 
Sbjct: 23  DSDPPSAKDVDLLYRFIDQSKKLMVLTGAGMSTESGIPDYRSPNGAYS---SGFKPLTHQ 79

Query: 484 SF 489
            F
Sbjct: 80  EF 81


>02_05_0090 - 25742533-25744557
          Length = 674

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 337 LLAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVWTLEKEGKKPTINVSFADAQP 504
           LL+  V  S  I      G S+S G+   R     W+ + +G  P++NVS   A P
Sbjct: 234 LLSAAVNLSAVIEDEAYVGFSSSTGVVASRHYVLAWSFKMDGPAPSLNVSKLPALP 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,916,298
Number of Sequences: 37544
Number of extensions: 325576
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)