Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a22
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 401 VLMPAPVWTTICLLSFTS*AKSTH 330
           +L+   +W T+C+L+    + STH
Sbjct: 321 ILVTLSIWITVCVLNVHFRSPSTH 344


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 75  VAHFFLKYKKLNTSIIRSSLLCPYYK 152
           +  +FL+YKKL     +S L  P  K
Sbjct: 427 ILSYFLRYKKLQPQYSQSELQMPGVK 452


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 75  VAHFFLKYKKLNTSIIRSSLLCPYYK 152
           +  +FL+YKKL     +S L  P  K
Sbjct: 427 ILSYFLRYKKLQPQYSQSELQMPGVK 452


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 363 TIFHKLSQEYTFLVQFVI*IKFLWD 289
           +I H    EY+  V F + +K +W+
Sbjct: 67  SIQHYNVDEYSHTVDFHVMLKLMWE 91


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 364 KHIVVHTGAGISTSAGIPDFRG 429
           KH+ +H   G+    G+P   G
Sbjct: 321 KHLKIHDTCGVHNLHGMPGILG 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,813
Number of Sequences: 438
Number of extensions: 3618
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)