Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a21
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   1.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.0  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   7.0  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 305 WLGCSSFFQ 331
           WL CSSFFQ
Sbjct: 412 WLSCSSFFQ 420


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 2   VLHLKNKHRCIFSV 43
           ++HL  ++RCIFS+
Sbjct: 273 LIHLLQEYRCIFSL 286


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 258 YTPLIS*PLVKIYFAFC 208
           Y P+++  ++KI FA C
Sbjct: 161 YCPIVTTGIIKIQFATC 177


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,019
Number of Sequences: 336
Number of extensions: 3678
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)