Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6a21
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 72 9e-14
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 42 6e-05
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 30 0.35
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 29 0.82
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 2.5
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 3.3
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 27 3.3
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 5.8
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 26 5.8
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 7.6
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.6
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.6
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 7.6
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 25 7.6
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 71.7 bits (168), Expect = 9e-14
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 4/172 (2%)
Frame = +1
Query: 166 LLLGKTFPDFSA----NTTEGEINFHEWLGDKWGILFSHPSDFTPVCTTELARVLVLLPE 333
L +GK PDF N EI ++ G KW L +P DFT VC TE+ +
Sbjct: 3 LQIGKPAPDFKGTAVVNGAFEEIKLADYKG-KWVFLGFYPLDFTFVCPTEIVAFSEAASK 61
Query: 334 FVKRNTKVIGLSCDSVSSHLEWCKDIKSFAGCNEDEPFPYPIIEDEKRELANKLGMIDND 513
F +RN +VI S DS SHL + + G P++ D +++ G++ D
Sbjct: 62 FAERNAQVILTSTDSEYSHLAFINTPRKEGGLG---GINIPLLADPSHKVSRDYGVLIED 118
Query: 514 ELDHKGMPLTARAVFIVDPNKKFRLSILYPATTGRNFDEILRILDSLQLTDK 669
+ R +F++DP R + GR+ DE LR+LD+ Q ++
Sbjct: 119 ------AGVAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEE 164
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 42.3 bits (95), Expect = 6e-05
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Frame = +1
Query: 172 LGKTFPDFSANTTEG-EINFHEWLGDKWGILFSHPSDFTPVCTTELARVLVLLPEFVKRN 348
+G PD + +G I + +K ++F++P TP CT + P+ +
Sbjct: 48 VGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASD 107
Query: 349 TKVIGLSCDSVSSHLEWCKDIKSFAGCNEDEPFPYPIIEDEKRELANKLG 498
+V+GLS D+ + K+F + + FPY ++ D K EL KLG
Sbjct: 108 YEVLGLSFDTSKAQ-------KAF---KDKQNFPYHLLSDPKGELIKKLG 147
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 346 NTKVIGLSCDSVSSHLEWCKDIKSFAGCNEDEPFPYPIIEDEKRELANKLGMI 504
NT VIG++ D+V + +W + F P+I D E+ ++GM+
Sbjct: 141 NTDVIGITTDTVENICQWKAHLPRAL------QFSLPVISDSNNEICREMGML 187
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 28.7 bits (61), Expect = 0.82
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 244 DKWGILFSHPSDFTPVCTTELARVLVLLPEFVKRNTKVIGLSCDSVSSHLEWCKDIKSF 420
D W L HP + +C+T L R+ V + E+V R+ ++ + + H ++ D F
Sbjct: 319 DSWSKLGIHPQNHM-ICSTPLFRLWVGVSEYVFRHPGLLDSCIYTATKHNDFSPDDLEF 376
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 355 VIGLSCDSVSSHLEWCKDIKSFAGCNEDEPFPYPIIEDEK--RELANK 492
++GLS V+ +E + ++ D+P + EDE+ RELAN+
Sbjct: 55 LLGLSDPQVAEEMEQAETSYAYDTAAHDDPVQRQLEEDERCARELANR 102
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = -1
Query: 422 AKDLMSLHHSK*EDTLSQDRPMTFVLRFTNSGRRTSTRANSVVQTGVKSD 273
AK L S H S EDT D+P F + R S S G SD
Sbjct: 245 AKILNSSHGSHEEDTHHADKPQAHSRSFVGTARYVSPEVLSDKIAGTASD 294
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = -3
Query: 558 EDCTGCQRHS-FVIQFVIVN----HAELVGQLSLLVFNYRIRKWFVFIATSKRLNVLAPF 394
E CT ++H+ ++ F N + ELV +LL + + ++ F+ K+L F
Sbjct: 227 EICTETEQHTQTLVHFQSRNFHQWYFELVNNFNLLFYGFGSKEHFLSSFVEKKLPCFPIF 286
Query: 393 QVRGY 379
V+GY
Sbjct: 287 VVKGY 291
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/67 (25%), Positives = 25/67 (37%)
Frame = -3
Query: 522 IQFVIVNHAELVGQLSLLVFNYRIRKWFVFIATSKRLNVLAPFQVRGYTVTGQANDFCVA 343
I +I N+AE G F R W K + +R + G DF V
Sbjct: 1209 IAIIISNYAERTGSA---FFTAEQRAWLELRRKIKSMRPSKRPAIRPLGLRGLCYDFAVQ 1265
Query: 342 LHKLWKK 322
H +W++
Sbjct: 1266 KHGIWRR 1272
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 508 NDELDHKGMPLTARAVFIVDPNKKFRLSILYPATTGRNFDEILRILDSL 654
+DE+ L AR + D N+K R ++L F E ++D L
Sbjct: 416 DDEISATLRSLNARLKVVSDENEKMRNALLQMLPEEMAFQEFQNVMDDL 464
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 262 FSHPSDFTPVCTTELARVLVL 324
+SHP DF P+ TE +V+ +
Sbjct: 189 YSHPLDFCPIIDTEDQKVVAI 209
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 570 RID--NEDCTGCQRHSFVIQFVIVNHAELVGQLSLLVFNY 457
R+D NEDC RH + ++ NH++L S +NY
Sbjct: 555 RVDRINEDCILAARHLISLVHLLQNHSQL-SCYSFFDYNY 593
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 217 EINFHEWLGDK 249
E+NF+EWL DK
Sbjct: 291 EVNFYEWLNDK 301
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/72 (20%), Positives = 35/72 (48%)
Frame = -2
Query: 247 YLLATRENLFRLLLCWQRSLEKFFQVKAC*KIYFKNIFLSVFCVFFLRQITQYYKSNYTS 68
Y L+ EN ++ L CW + LEK ++ Y + ++ C + I ++++ +
Sbjct: 274 YFLSYVENRYQSLDCWNKFLEK--EIDPSFIKYCTKLEVTAGCT-LISYIADRLQNSHPN 330
Query: 67 VKRSIQIQYTKY 32
++ I++ +Y
Sbjct: 331 IQPPIRVSLNEY 342
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 448 PYPIIEDEKRELANKLGMIDNDELDHKGMPLTARAVFIVDPNKKFRLSILYPATTGRN-F 624
PY + + ++ + IDN +DH ++ +I D + F ++I +P+ N F
Sbjct: 391 PYLKVGKQLDDMRHSRLRIDNVAIDHLNRGVSGAFGWINDGSVDFLVNISFPSEPSENSF 450
Query: 625 DEI-LRILDSLQLTDK 669
+ + ++D L+ +K
Sbjct: 451 QKAWISLMDKLKKKEK 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,971
Number of Sequences: 5004
Number of extensions: 59342
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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