Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a21
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 305 WLGCSSFFQ 331
           WL CSSFFQ
Sbjct: 416 WLSCSSFFQ 424


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +3

Query: 297 NRIGSGARPSSR-VCEAQ 347
           NR+GS  RPS R  CE+Q
Sbjct: 396 NRVGSTRRPSRRNSCESQ 413


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 659 NWRESSMRRISSKL---RPVVAGYNIDSLNFLFG 567
           +W ++   RI+       P+   YNI  LNF +G
Sbjct: 221 SWEQNRSWRITHSYFMPDPLAGDYNIGGLNFQWG 254


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 283 TPVCTTELARVLVLLPEFVKRNTKVIGLSCDSVSS 387
           T VC+     + + L  F    + VIG  C  V S
Sbjct: 27  TDVCSASNGELFLALLNFFVATSPVIGEPCQRVHS 61


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/36 (19%), Positives = 18/36 (50%)
 Frame = -2

Query: 154 IYFKNIFLSVFCVFFLRQITQYYKSNYTSVKRSIQI 47
           +YF  +FL ++  +F+ Q    ++ N     + + +
Sbjct: 224 VYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNV 259


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/36 (19%), Positives = 18/36 (50%)
 Frame = -2

Query: 154 IYFKNIFLSVFCVFFLRQITQYYKSNYTSVKRSIQI 47
           +YF  +FL ++  +F+ Q    ++ N     + + +
Sbjct: 100 VYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNV 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,593
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)