Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6a18
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 28 1.0
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 28 1.4
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ... 27 2.4
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||... 27 3.2
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 27 3.2
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.2
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.2
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 26 4.2
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 26 4.2
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 26 5.5
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 26 5.5
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 7.3
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 9.7
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 9.7
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 9.7
SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces po... 25 9.7
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 332 HWSPSFAGGLQFAGASVHQRFLHARLR-GIP 421
+W P L+F G+S + +H RLR G+P
Sbjct: 604 YWDPFMITDLKFIGSSENAELIHQRLRNGLP 634
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 375 RRFIKDSYTLDYVEFLKAVEAVQKEGIQGLGPAYNNPNAI 494
RR Y +Y++F + + +GLGP Y NPN I
Sbjct: 40 RRLFYHGYN-NYMQFAFPNDELAPLSCEGLGPDYENPNNI 78
>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 430
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 342 LVSPEDFNLLVRRFIKDSYTLDYVEFLKAVEAVQKEGIQGLGPAYNNPNAIIDTTLP 512
+V DF + + + + T+ E + +++ V G +G Y +PN I+ TLP
Sbjct: 278 IVRQLDFRVKSQNHLSYNTTMKIFELIPSIKLVLS-GHDHMGCDYEHPNGAIEHTLP 333
>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 471 AYNNPNAIIDTTLPKLPRPEIEAGLSTAPLGANDVFHPVLDPPKPPRQLVELMLRVQE 644
AY N I+D L K PR + E+G T D + L + P+Q + ++RVQ+
Sbjct: 90 AYTLLNKILDEFLTKNPRTKWESGAVTLSFPELDTY---LSKYQDPKQ-ADTIMRVQQ 143
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 467 SKALDALLLHSFNSFKEFHVVERVRIFDEPTHQQI 363
SK ++ LL FNS K +H + V+ +D+P H+ I
Sbjct: 139 SKPVNFLLYQPFNSGKYYHNWQFVQNYDDP-HETI 172
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 49 KTEGYYTISCARSCTVKIPTPAIRFP 126
K GYY + R ++ +PTP FP
Sbjct: 130 KKSGYYERTSTRKRSLTVPTPRTSFP 155
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 556 GAVDNPASISGRGNLGSVVSIMAL 485
G A +SG GNLGSVV+ AL
Sbjct: 543 GVAAGLAIVSGLGNLGSVVATSAL 566
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 556 GAVDNPASISGRGNLGSVVSIMAL 485
G + A ++G GNLGSVV+ AL
Sbjct: 471 GVASSLALVTGLGNLGSVVTTYAL 494
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 34 ITSELKTEGYYTISCARSCTVKIPTPAIRFPQI 132
IT+ L+ EG + A T +P P I FP +
Sbjct: 238 ITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLV 270
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 303 FAHFARILNFIGVLVSPEDFNLLVRRFIKDSYTLD----YVEFLKAVEA 437
+A++ + + F G + + +V+R+IK SY D ++EFL V A
Sbjct: 12 YAYYNQTVTFFGKALDVLPGSPIVKRYIKSSYQNDPLRTFIEFLLLVFA 60
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 252 PYFQDYEMV--AKNDGRITFAHFARILNFIGVLVSPEDF 362
P D+EM A++ TFA F R+ +F + SPE F
Sbjct: 478 PELSDFEMYMRARSLNPATFAGFVRLNHFTLLCCSPERF 516
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -2
Query: 505 VVSIMALGLL*AGPRPWMPSFCTASTALRNST*SSV*ESLMNRRTSKLKSSGETRTPMKF 326
+V+ ++ G L P + SFCT S+ L N S+ + T S R+P F
Sbjct: 609 IVAGLSHGPLHGFPLTNLQSFCTISSFLSNDFPLSLLTQASMKATKNAVFSLYKRSPKSF 668
Query: 325 RI 320
RI
Sbjct: 669 RI 670
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 143 GMSSSAGTGLP*ARSVANQTTLLPTSYNSFEEST 244
G++ SA L ++ANQ L+P +N F E++
Sbjct: 1130 GITDSAFQLLASIPALANQENLVPAFFNKFREAS 1163
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 582 DGRHH*LLEALSIILLQFRDVATWAVSYLLWH 487
DGR L +A+ + F A A+ YLL H
Sbjct: 369 DGRRRALTKAIHSCAINFPHTAATAIQYLLSH 400
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 391 SLMNRRTSKLKSSGETRTPMKFRIRAK*ANVIRPS 287
SL R S+++S+ +RT +R K AN++RPS
Sbjct: 360 SLGVRSPSRIQSTLSSRTTTG-NVRTKAANIVRPS 393
>SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 582 PVLDPPKPPRQLVELMLRV 638
PV D PKPP+ + L L V
Sbjct: 173 PVTDSPKPPKDRITLTLPV 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,828
Number of Sequences: 5004
Number of extensions: 55659
Number of successful extensions: 195
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -