Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6a18
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0327 + 16420327-16420473,16420618-16420663,16421561-164217... 32 0.47
10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250... 31 0.81
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 30 1.9
02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875 29 3.3
12_01_0450 - 3552701-3552865,3552971-3553195,3553306-3553473,355... 29 4.3
02_02_0327 - 8983983-8985878 29 4.3
08_01_0039 + 284948-285301 28 5.7
01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688 28 5.7
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 28 5.7
11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844 28 7.6
10_08_0002 - 13986969-13989338 28 7.6
06_02_0365 + 15190841-15190988,15191296-15191754,15192692-151927... 28 7.6
03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407... 28 7.6
>11_04_0327 +
16420327-16420473,16420618-16420663,16421561-16421702,
16423700-16423779,16424487-16424677
Length = 201
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 616 SCRGGFGGSRTGWKTSLAPRGAVDNPASISGRGNLGSVVSIMALGLL 476
S RGG GG + W + GA + + RGN S+ + LG L
Sbjct: 6 SSRGGGGGRKASWLGMSSEGGAAKFLSGLPSRGNFSSISASSTLGRL 52
>10_01_0240 -
2506901-2507008,2507950-2508322,2508418-2508612,
2508771-2508885,2510027-2510132,2510253-2510366,
2510521-2510538
Length = 342
Score = 31.1 bits (67), Expect = 0.81
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Frame = +3
Query: 195 IRRLCCLLATIASRNLPLKPYFQDYEMVAKN--DGRITFAHFARILNFIGVLVSPEDFNL 368
++ L C+ AS L E+V KN D R++ RI+ F+G V E
Sbjct: 72 VKFLACMHGLEASGEANLTATLNIAELVLKNRPDKRLS----QRIVVFVGSPVKDEKLET 127
Query: 369 LVRRFIKDSYTLDYVEFLKAVEAVQKEGIQGLGPAYNNPNAIIDTTLPKLPRPEIEAGLS 548
+ ++ K + +LD VEF ++ + + E ++ L A + I+ +P P ++ A L+
Sbjct: 128 IGKKLKKYNVSLDVVEFGES-DDEKPEKLEALVAAVGGSSHIVH--IP--PGEDLRAVLA 182
Query: 549 TAPLGAND 572
P+ D
Sbjct: 183 NTPIITGD 190
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 510 PKLPRPEIEAGLSTAPLGANDVFHPVLDPPKPPRQL 617
P++P P AG S++ G + L PP PP L
Sbjct: 177 PRIPLPSSSAGASSSMPGTEEAGPSTLPPPPPPPPL 212
>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
Length = 356
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 610 GSWWNSC*GCKSLC 651
G+WW SC CKS C
Sbjct: 248 GNWWTSCIFCKSFC 261
>12_01_0450 -
3552701-3552865,3552971-3553195,3553306-3553473,
3554514-3554629,3554735-3554887,3554978-3555121,
3556667-3557276
Length = 526
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 285 NDGRITFAHFARILNFIGV-LVSPEDFNLLVRRFIKDSYTLDYVEFLKAVEAVQK 446
N G IT+ L +G L+ PE L+ I +S T+DY EFL A + K
Sbjct: 366 NSGTITYDELKNGLKRVGSDLMEPEIQALMDAADIDNSGTIDYGEFLAATLHMNK 420
>02_02_0327 - 8983983-8985878
Length = 631
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = -2
Query: 655 CSTNSCTLSM--SSTSCRGGFGGSRTGWKTSLAPRGAVDNPASISGRGNLGSVV 500
C ++ C S S+ C+ GG R W + GA D P RG G V
Sbjct: 469 CQSSGCDKSAQGSTNFCKAHGGGKRCLWGHEGSDHGAGDTPCERLARGKNGLCV 522
>08_01_0039 + 284948-285301
Length = 117
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 223 VASRQQSRLICH*SSLWQAGSGGGGHASRK 134
VA R++ R C W AG GGGG AS +
Sbjct: 17 VARRRRHRRSCGDVGGWWAGVGGGGKASMR 46
>01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688
Length = 241
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 192 ATDLAYGRPVPAEEDMPLGSNLRKSYRGRWNLHRARPGTADG 67
A GR V AEE++ LG R+ RW+ RA G G
Sbjct: 23 AAQYQMGRGVVAEEEVELGGGGRRRGSKRWSKKRAGRGGYGG 64
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +3
Query: 471 AYNNPNAIIDTTLPKLPRPEIEAGLSTAPLGANDVFHPVLDPPKPPR 611
A NN NA + TT + P E GLS A P L K PR
Sbjct: 170 ATNNRNAPVATTTTREPSKESHGGLSVPTTRAEPQPQPQLAAAKLPR 216
>11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844
Length = 774
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 381 FIKDSYTLDYVEFLKAVEAVQKEGIQGLGPAYNNPNAIIDTTLPK 515
F+K+ + V+ K ++ V K Q L P+ NPN + +T P+
Sbjct: 102 FLKNDIAEEVVKLEKQIQQVIKLKEQWLHPSQLNPNQLAETGRPR 146
>10_08_0002 - 13986969-13989338
Length = 789
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 143 GMSSSAGTGLP*ARSVANQTTLLPTSYNSFEESTFETLFSGL 268
G S + G GL A +AN L P ++FE E+L GL
Sbjct: 11 GESGNGGAGLGLAAFIANGEDLGPIVRHAFESGKPESLLQGL 52
>06_02_0365 +
15190841-15190988,15191296-15191754,15192692-15192782,
15192902-15193003,15193126-15193228,15193548-15193685,
15193912-15193974,15195042-15195124,15196312-15196411,
15196640-15196717,15196834-15196941,15197987-15198067,
15200179-15200220,15200221-15200283,15200426-15200482
Length = 571
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 189 WQIRRLCCLLATIASRNLPLKPYFQDYE 272
WQ+ ++ LLA IAS +P + YE
Sbjct: 531 WQVSKVAALLAPIASSGMPTTLQYPPYE 558
>03_06_0235 +
32539025-32539886,32540330-32540473,32540595-32540747,
32540871-32540986,32541254-32541421,32541534-32541758,
32541884-32542015
Length = 599
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 285 NDGRITFAHFARILNFIGV-LVSPEDFNLLVRRFIKDSYTLDYVEFLKAVEAVQK 446
N G+ITF L +G L E + L+ + +S T+DY EF+ A + K
Sbjct: 450 NSGQITFEELKVGLKKVGANLQESEIYALMQAADVDNSGTIDYGEFIAATLHMNK 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,710,272
Number of Sequences: 37544
Number of extensions: 432487
Number of successful extensions: 1821
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1815
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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