Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a18
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.21 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.21 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +2

Query: 296  YNIRSFRSNPKFHWSPSFAGGLQFAGASVHQRFLHARL 409
            Y   S  S+   HW     GG    G ++H R  H  L
Sbjct: 1411 YVTSSTSSSILLHWKSGHNGGASLTGYTLHYRTAHGNL 1448


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +2

Query: 296  YNIRSFRSNPKFHWSPSFAGGLQFAGASVHQRFLHARL 409
            Y   S  S+   HW     GG    G ++H R  H  L
Sbjct: 1407 YVTSSTSSSILLHWKSGHNGGASLTGYTLHYRTAHGNL 1444


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = -2

Query: 607 GGFGGSRTGWKTSLAPRGAVDNPASISGRGNLGSVVSIMALGLL*AGPRP 458
           G  G   T +   L  +  +D+P   S       +  I+A+GL    P P
Sbjct: 315 GMIGAFITCFTMPLLDKMHIDDPVGASATHGASGIWGIIAIGLFADNPYP 364


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 330 NLGFERNERMLYDRHFLLPFHNPE 259
           +L F   +   Y RH   P+H PE
Sbjct: 310 SLAFRVFQSTQYIRHIKSPYHTPE 333


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 308  SFRSNPKFHWSPSFAGGLQFAGASVHQRFLHARLRGI 418
            +F + P F  SP  AG          Q F  +R+RG+
Sbjct: 1162 NFWNPPPFMPSPFMAGAPNVPTILPEQYFATSRIRGL 1198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,045
Number of Sequences: 438
Number of extensions: 4268
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)