Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a10
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0271 - 21804629-21805836,21805997-21806015                       33   0.18 
11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513     29   2.9  
11_01_0273 - 2048527-2049297                                           29   3.9  
12_01_0282 - 2088302-2089081                                           28   5.1  
02_03_0392 + 18485837-18485845,18486042-18486119,18486450-184865...    27   8.9  
02_02_0480 + 10799242-10799365,10799748-10800044,10800081-108002...    27   8.9  

>11_06_0271 - 21804629-21805836,21805997-21806015
          Length = 408

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 449 LNLQEIIIYSLKFST**HFF--INYFSFPCLFVFKKQTKSFITIKYD 583
           L+ ++I IY+L FST  H    IN     CLF+  + +KSF   +YD
Sbjct: 300 LDTEKIGIYALDFSTNPHSLTEINNLDGDCLFISLRSSKSFPACQYD 346


>11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513
          Length = 404

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 458 QEIIIYSLKFST**HFF--INYFSFPCLFVFKKQTKSFITIKYD 583
           + I IY+L FST  +    IN     CLF+  + +KSF   +YD
Sbjct: 299 RRIGIYALDFSTNPYSLTEINNLDGDCLFISSRSSKSFPACQYD 342


>11_01_0273 - 2048527-2049297
          Length = 256

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 244 PATCLPSPSNVVVFVKPHAMESHP 315
           PAT LP+ + VVV   PHA+  +P
Sbjct: 42  PATPLPTSTTVVVLHHPHALRRNP 65


>12_01_0282 - 2088302-2089081
          Length = 259

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 244 PATCLPSPSNVVVFVKPHAMESHP 315
           PAT LP+ + VV+   PHA+  +P
Sbjct: 42  PATPLPTSTTVVILHHPHALRRNP 65


>02_03_0392 +
           18485837-18485845,18486042-18486119,18486450-18486550,
           18487000-18487087,18487753-18487897,18487968-18488050,
           18488189-18488254,18488572-18488628,18489084-18489206,
           18489645-18489696,18489830-18489944,18490018-18490147
          Length = 348

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 250 TCLPSPSNVVVFVKPHAMESHPCQQY 327
           T L + ++VV   KP ++  HPC QY
Sbjct: 74  TILQNEADVVTVCKPASVPVHPCGQY 99


>02_02_0480 +
           10799242-10799365,10799748-10800044,10800081-10800248,
           10800525-10800805,10800860-10801205,10801425-10801428,
           10801533-10801575
          Length = 420

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 274 HSRDWVD-KSQDTSWTIKNLTHCF--IEIVTVTSVCLKFSILKRFRA 143
           HSR  +  + QD SW I  +  CF  I+   + ++CL   + + F A
Sbjct: 132 HSRRPISLRDQDGSWNITEINRCFLGIDAEIIPTICLSPHLEEDFLA 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,659,433
Number of Sequences: 37544
Number of extensions: 188158
Number of successful extensions: 411
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)