Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a10
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79759-4|CAB02139.2|  395|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U67737-1|AAC63596.1|  395|Caenorhabditis elegans MEL-26 protein.       28   4.6  
AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z68159-5|CAA92288.2|  472|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z79759-4|CAB02139.2|  395|Caenorhabditis elegans Hypothetical
           protein ZK858.4 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 259 VDKSQDTSWTIKNLTHCFIE 200
           V+K Q T WT+KN +HC+ E
Sbjct: 39  VEKVQHT-WTVKNFSHCYQE 57


>U67737-1|AAC63596.1|  395|Caenorhabditis elegans MEL-26 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 259 VDKSQDTSWTIKNLTHCFIE 200
           V+K Q T WT+KN +HC+ E
Sbjct: 39  VEKVQHT-WTVKNFSHCYQE 57


>AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical
           protein Y39G8B.4 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 405 TMCFPAFFLMLIGVKGFPSLTITVYKILLARMTFH 301
           T+C+P + L    +  FP L ++V   LL  +TF+
Sbjct: 10  TICWPIYILQNFKLVEFPGLLLSVLDFLLFFLTFY 44


>Z68159-5|CAA92288.2|  472|Caenorhabditis elegans Hypothetical
           protein C33D9.5 protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 404 VLQ*LFKSHESHKEDLNLQEIIIYSLK 484
           VLQ +  SHE+H+++L  +++ I SLK
Sbjct: 156 VLQSVLDSHEAHRDELKKKDMEIDSLK 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,277,679
Number of Sequences: 27780
Number of extensions: 202215
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)