Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a09
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    24   5.8  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    23   7.7  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    23   7.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   7.7  

>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 188 CKDLQDSXVVLVARCSGKGAEMQVHRSDDNPEXNRLVDNN 69
           CK  Q+S   +V+   G+GA+M      D+ +  + +  N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +2

Query: 131 LLCQSSVPPTXRX--YPVNPCIXIYSCYTQIMXRNGR 235
           LLC    P   R   +P+NP +   SC+  +  RN +
Sbjct: 88  LLCYFETPFFMRKELFPLNPHLKYTSCFPLLPLRNDK 124


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 188 CKDLQDSXVVLVARCSGKGAEMQV 117
           C+ +QD+ V++V   +G G   Q+
Sbjct: 106 CQQIQDNRVIVVVGETGSGKSTQI 129


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 77  PPVCSPPDCRPICGPASPLLCQSSVP 154
           PPV +PP   P   P+ P     S+P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLP 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 887,004
Number of Sequences: 5004
Number of extensions: 13194
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)