Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6a09
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 36 0.006
11_06_0610 - 25449085-25453284 27 2.9
04_03_1017 + 21747044-21748051 27 2.9
03_01_0515 - 3864796-3865425 27 2.9
04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521 26 5.1
12_02_0046 + 12830974-12832386 26 6.7
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 26 6.7
09_03_0192 + 13344558-13344942,13345038-13345591 26 6.7
08_02_1035 - 23840606-23841109,23841194-23841199 26 6.7
05_05_0288 - 23870228-23870965,23871515-23871584,23871662-238717... 26 6.7
04_04_0187 - 23411085-23411477,23411626-23411631 26 6.7
07_03_1107 - 24024387-24024497,24025799-24026410 25 8.9
05_05_0320 + 24085600-24086458,24087025-24087171,24087265-240873... 25 8.9
04_03_0801 - 19828175-19828770,19828913-19828994 25 8.9
02_05_0805 - 31859201-31860151 25 8.9
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +2
Query: 68 GYCPPVCSPPDCRPICGPASPLLCQSSVPPTXRXY 172
G CPP C PP C C P PL C PP Y
Sbjct: 128 GICPPPCPPP-CPLPCPPPCPLPCPPPCPPRGYGY 161
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTXRXYPVNP 184
PPV SPP P+ P P+ +S PP P P
Sbjct: 1195 PPVKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1228
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTXRXYPVNP 184
PP+ SPP P+ P P+ +S PP P P
Sbjct: 1163 PPIKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1196
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQS---SVPPTXRXYP 175
PP + PD P P+SPL + +VPP R +P
Sbjct: 270 PPRAASPDYTPSTPPSSPLPSAAESFTVPPPRRYHP 305
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTXRXYPV 178
PP SPP P P SP+ +SS PP PV
Sbjct: 94 PPAASPPPPPPSPPPPSPV--KSSPPPPPAWSPV 125
>04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521
Length = 136
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 89 SPPDCRPICGPASPLLCQSSVPPTXRXYPVNPCIXIYSC 205
S PDC CG SP C + V + + PC +Y C
Sbjct: 89 SLPDCSHACGACSP--C-NRVMVSFKCSIAEPCPMVYRC 124
>12_02_0046 + 12830974-12832386
Length = 470
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 77 PPVCSPPDCRPICGP--ASPLLCQSSV 151
PPV SPP + I GP ASP QS V
Sbjct: 279 PPVPSPPCAKKIRGPVSASPAARQSCV 305
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 182 DLQDSXVVLVARCSGKGAEMQVHRSDDNPEXNRLVDNN 69
D+Q + L A+CS K E+++ +D+ +L N
Sbjct: 666 DMQQTITKLTAQCSEKAFELELRSADNRVLQEQLQQKN 703
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 80 PVCSPPDCRPICGPASPLL 136
P+C P P+C SPLL
Sbjct: 162 PLCIEPPSSPVCNAPSPLL 180
>08_02_1035 - 23840606-23841109,23841194-23841199
Length = 169
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = -1
Query: 177 TG*XRXVGGTLL---WQRSGDAGPQIGRQSGGEQTGG 76
TG GG ++ W GD G G + GG TGG
Sbjct: 66 TGAGAETGGGVVTGGWAAGGDTGATAGGRVGGVATGG 102
>05_05_0288 -
23870228-23870965,23871515-23871584,23871662-23871749,
23871825-23871882,23871963-23872039,23872111-23872258
Length = 392
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 143 SGKGAEMQVHRSDDNPEXNRLVDNNPF 63
SGK ++ H DDN + R D N F
Sbjct: 363 SGKNLDLNTHNIDDNDQGYRHFDLNGF 389
>04_04_0187 - 23411085-23411477,23411626-23411631
Length = 132
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +2
Query: 71 YCPPVCSPPDCRPICGPASPLLCQSSVPP 157
Y PP PP P C P P + PP
Sbjct: 90 YWPPYWCPPPEDPTCKPCYPRYSYAPPPP 118
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTXRXYP 175
PP SPP P+ P SP + PT P
Sbjct: 107 PPASSPPVEAPVASPPSPAAEAPATIPTKPDAP 139
>05_05_0320 +
24085600-24086458,24087025-24087171,24087265-24087395,
24087536-24087746,24087834-24088071,24088757-24088931
Length = 586
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQS 145
PP SPP CRP P LLC S
Sbjct: 3 PPPPSPP-CRPRVKPERALLCFS 24
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Frame = +2
Query: 80 PVCSPPDC--RPICGP 121
P CSPP C +P+C P
Sbjct: 190 PCCSPPPCPWQPVCPP 205
>02_05_0805 - 31859201-31860151
Length = 316
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 74 CPPVCSPPDCRPICGPASPLLCQSSVPPT 160
CP C+ P +P+ GP +P L VPP+
Sbjct: 196 CPGQCAWPFHQPVYGPQTPAL----VPPS 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,131,876
Number of Sequences: 37544
Number of extensions: 112186
Number of successful extensions: 402
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -