Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a09
         (306 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   1.1  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   1.1  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   2.0  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    20   6.0  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 71  YCPPVCSPPDCRPICGP 121
           +CP V   P C  IC P
Sbjct: 53  FCPNVVPKPLCIKICAP 69


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 71  YCPPVCSPPDCRPICGP 121
           +CP V   P C  IC P
Sbjct: 53  FCPNVVPKPLCIKICAP 69


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 71  YCPPVCSPPDCRPICGPASPLL 136
           +C P C P    P     SPLL
Sbjct: 43  FCLPFCGPNVINPFFCDMSPLL 64


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = +2

Query: 71  YCPPVCSPPDCRP-IC--GPASPLLCQSSVPPTXRXYPVNPCIXIYSCYT 211
           +C P C P    P  C   P+  LLC  +       + V   + ++S  T
Sbjct: 44  FCLPFCGPNVINPFFCDMSPSLSLLCADTRLNKLAVFIVAGAVGVFSSPT 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,686
Number of Sequences: 438
Number of extensions: 1005
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)