Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a07
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   3.1  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   4.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.4  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +2

Query: 5   FRSLKQDDVYKQSMLIIKINLPLT------KTNAPKLRIQVISKRSKQRSYT 142
           F   +  D++ +  + +KINLP +      K    K R Q+  +++K  S T
Sbjct: 146 FAKTRYPDIFMREEVAVKINLPESRVQVWFKNRRAKCRQQLQQQQNKSASRT 197


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 460 SAVKKKAIVRLTAIKQGSDSEQILELSDVEERIITLMGGEKFVVPETPKH 609
           S + ++ +V   AI +G D+E+ L+ + +  R+   M     V+    KH
Sbjct: 84  SGLTEEEVVLSNAIAEGPDAEKALQRAALILRLREGMNSLSRVLKSIEKH 133


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 271 PDQVYTLLEVMEINPLLAKGHVKSVMARQ 357
           PD VY+ +  +    LL+  ++ +V+  Q
Sbjct: 367 PDSVYSFINNLTDRKLLSAWYMNTVLGHQ 395


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 271 PDQVYTLLEVMEINPLLAKGHVKSVMARQ 357
           PD VY+ +  +    LL+  ++ +V+  Q
Sbjct: 259 PDSVYSFINNLTDRKLLSAWYMNTVLGHQ 287


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,367
Number of Sequences: 336
Number of extensions: 3783
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)