Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a07
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    27   2.5  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    27   3.3  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    26   4.4  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   5.8  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.8  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.7  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   7.7  

>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +1

Query: 304 EINPLLAKGHVKSVMARQTATRHWH-HLAIKLNNMGGATKTGKQW 435
           E+NP LAK   + +++++T        LA+ L+++ G++++ + W
Sbjct: 29  EVNPWLAKDLARKILSKKTLRESLSCVLALPLDHVTGSSESMENW 73


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 6/32 (18%), Positives = 17/32 (53%)
 Frame = -2

Query: 594 WYYKLLTAHQSYDSFFHIGQFQYLFAVRSLFY 499
           W++      + Y  F+H+G F+  + + + ++
Sbjct: 173 WFFNTDAFWEEYPHFYHVGSFKAFYLIEAAYW 204


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 476 FFLTALFLSDQYFAHCFPVFVAPPILFSLIAK*CQCLVAVCLAITDL 336
           FFL++LF+S         +F AP  L +L A     ++A+   I DL
Sbjct: 302 FFLSSLFISPSNKESLVILFAAPVFLITLFAMFLWIVLALNNTIRDL 348


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 26   DVYKQSMLIIKINLPLTKTNAPKLRIQVISKRSKQRSYTPEMIL 157
            D+  Q   +I++  PL K + PK++  V    +    Y P+ +L
Sbjct: 1030 DLVLQKSHLIELLFPLMKLSDPKIQYYVKVSNALSEKYLPQGVL 1073


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = +1

Query: 547  EERIITLMGGEKFVVPETPK-----HAAINDSYKDPPGRVP 654
            EE  ++ M G K  +PETPK     H+  N S+   P   P
Sbjct: 1585 EESTVSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQP 1625


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = +1

Query: 547  EERIITLMGGEKFVVPETPK-----HAAINDSYKDPPGRVP 654
            EE  ++ M G K  +PETPK     H+  N S+   P   P
Sbjct: 1585 EESTVSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQP 1625


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 403 MGGATKTGKQWAKYWSDKKS-AVKKKAIVRLTAIKQG 510
           M  A  T   W KY+S+KK   VK  + + L  I +G
Sbjct: 1   MAPAVFTSDYWKKYFSNKKKPTVKNTSDIDLLHINRG 37


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 75  RKPMLQNSEFKSSPRDRSNV 134
           +K ML+N E+K +P+ RS V
Sbjct: 70  QKHMLENPEYKYTPKKRSTV 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,923
Number of Sequences: 5004
Number of extensions: 59791
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)