Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a07
         (685 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    29   0.18 
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       29   0.18 
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       29   0.18 
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       29   0.18 
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    25   2.9  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      24   5.1  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    23   6.8  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   6.8  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 0.18
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +1

Query: 511 SDSEQILELSDVEERIITLMGGEKFVVPETPKHAAINDSYKDPPGRVPDEDRD 669
           +D+ +     D     ITL    KF+  E  +HAAIN S K  P  V  E  D
Sbjct: 272 ADNHKAFRFVDPTSNKITLSRDAKFIEMEDFEHAAINRSKKTNPQIVEYEFDD 324


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 28.7 bits (61), Expect = 0.18
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +1

Query: 511 SDSEQILELSDVEERIITLMGGEKFVVPETPKHAAINDSYKDPPGRVPDEDRD 669
           +D+ +     D     ITL    KF+  E  +HAAIN S K  P  V  E  D
Sbjct: 42  ADNHKAFRFVDPTSNKITLSRDAKFIEMEDFEHAAINRSKKTNPQIVEYEFDD 94


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 28.7 bits (61), Expect = 0.18
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +1

Query: 511 SDSEQILELSDVEERIITLMGGEKFVVPETPKHAAINDSYKDPPGRVPDEDRD 669
           +D+ +     D     ITL    KF+  E  +HAAIN S K  P  V  E  D
Sbjct: 42  ADNHKAFRFVDPTSNKITLSRDAKFIEMEDFEHAAINRSKKTNPQIVEYEFDD 94


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 28.7 bits (61), Expect = 0.18
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +1

Query: 511 SDSEQILELSDVEERIITLMGGEKFVVPETPKHAAINDSYKDPPGRVPDEDRD 669
           +D+ +     D     ITL    KF+  E  +HAAIN S K  P  V  E  D
Sbjct: 42  ADNHKAFRFVDPTSNKITLSRDAKFIEMEDFEHAAINRSKKTNPQIVEYEFDD 94


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 600 SFWYYKLLTAHQSYDSFFH 544
           +FWY KL+T H+   + F+
Sbjct: 483 NFWYKKLITIHEQIAACFN 501


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 388 IKLNNMGGATKTGKQWAKYWSDKKSAVK 471
           I++ +  G  + G+ W   W D+K AVK
Sbjct: 259 IQMVHSVGKGRYGEVWLAKWRDEKVAVK 286



 Score = 23.4 bits (48), Expect = 6.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 670 CRGPRPGHVQEGPCSCR 620
           C G  PG++Q G C  R
Sbjct: 76  CEGHCPGNLQNGTCETR 92


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 602 PNTRQSTTATRTLLDVSRTRTATRNKP 682
           P+T ++ TATRT    +R   + + +P
Sbjct: 569 PSTSRARTATRTATTTTRALRSAKKEP 595


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 448  SDKKSAVKKKAIVRLTAIKQGSDSEQILELSDVEERIITLMGGE 579
            SD  S+ ++ ++ RLT I +     +  E  D+E  I+   G E
Sbjct: 945  SDSTSSSERNSVGRLTGIVRWFRRSKDRESVDLESGILAASGSE 988


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,821
Number of Sequences: 2352
Number of extensions: 14892
Number of successful extensions: 35
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)