Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6a05
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0074 - 561304-562131,562219-562425,563034-563084,563310-56... 32 0.55
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 31 0.95
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272... 30 2.2
03_05_0911 + 28697654-28697698,28698170-28698278,28698352-286984... 29 2.9
04_04_0392 + 24891478-24891612,24891875-24893092 28 6.7
03_02_0933 - 12505196-12505286,12505759-12505814,12508780-125088... 28 6.7
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700... 28 8.9
>01_01_0074 -
561304-562131,562219-562425,563034-563084,563310-563408,
564476-564622,564750-564851,565713-565928,566061-566192,
566249-566310,567618-567746,568426-568567,568735-568830,
568924-569000,569070-569148,569229-569297,569589-569703,
570614-570777,570847-571002
Length = 956
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 236 DLRYQTQNTFNVGNIINKCSENKRYKSNNVMKHKKLSSKMKASSFSYRAPKCSMRIA-EL 412
DL + +T + IN+CSE +N+++ + S K ++++ P+ ++++ L
Sbjct: 267 DLYIRELDTLSFELSINRCSEKLANLANDILLKESASEDQKTNTWNQTGPQNNLKLQHSL 326
Query: 413 AIPAK 427
A+PA+
Sbjct: 327 ALPAQ 331
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 31.1 bits (67), Expect = 0.95
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 104 DYNFGDSYNTENTYIDNHWTNGYAASSIDT 193
D D NT Y DNH +NG S DT
Sbjct: 490 DSRLSDDLNTTTVYSDNHGSNGGGTQSFDT 519
>02_05_0259 -
27226378-27226398,27226643-27226813,27227063-27227284,
27227508-27227668,27227933-27227996,27228002-27228194,
27228499-27228587,27228668-27228852,27229671-27229779,
27229880-27229936,27230023-27230175
Length = 474
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 485 ERLRKYVMDEYPIVRIPDAIRSFKHASSLKRSYR-RKHCNKTKPIKNSQKNKTKL 646
+R R+ V EY RIP + FK S ++ YR ++C +T+ + NS N K+
Sbjct: 406 KRHRRDVRSEYCKCRIPQIVPCFKGPSVIEFLYRSARYCTRTQ-VHNSLCNFVKV 459
>03_05_0911 +
28697654-28697698,28698170-28698278,28698352-28698433,
28698486-28698514,28699472-28699567,28699860-28699963,
28700071-28700201,28700276-28700369,28701666-28701721,
28702728-28702821
Length = 279
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Frame = +2
Query: 440 ETWRENYDKLSIFAVERLRKYVMDEYPIVRIPDAIRSFKHASSLK---RSYRRKHCNKTK 610
E R D L + E+L Y+ D+Y + P I F H L+ +RK+ N
Sbjct: 89 ENHRHLEDNLDDWLDEQLEGYLDDDYLVFDCPGQIELFTHVPVLRNFVEHLKRKNFNVCA 148
Query: 611 P-IKNSQ--KNKTKLLCKLFSRRIAHILINPPDVSLCSRLEKLLN 736
+ +SQ + TK + + A I + P +++ S+++ + N
Sbjct: 149 VYLLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVSN 193
>04_04_0392 + 24891478-24891612,24891875-24893092
Length = 450
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 584 GKTSSTNWRA*NYESHLGYALLDTRPS 504
GK S++ R+ YE+ LGY++ D RP+
Sbjct: 6 GKKKSSSSRSLMYEAPLGYSIEDVRPA 32
>03_02_0933 -
12505196-12505286,12505759-12505814,12508780-12508873,
12508949-12509079,12509187-12509290,12509585-12509680,
12510752-12510860,12511252-12511296
Length = 241
Score = 28.3 bits (60), Expect = 6.7
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Frame = +2
Query: 440 ETWRENYDKLSIFAVERLRKYVMDEYPIVRIPDAIRSFKHASSLK---RSYRRKHCNKTK 610
E R D L + E+L Y+ D+Y + P I F H L+ +RK+ N
Sbjct: 52 ENHRHLEDNLDDWLDEQLDGYLDDDYLVFDCPGQIELFTHVPVLRNFVEHLKRKNFNVCA 111
Query: 611 P-IKNSQ--KNKTKLLCKLFSRRIAHILINPPDVSLCSRLEKLLN 736
+SQ + TK + + A I + P +++ S+++ + N
Sbjct: 112 VYFLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVAN 156
>03_03_0090 +
14367033-14367279,14367402-14368205,14368314-14370039,
14370135-14370219,14370398-14370457,14370744-14370836
Length = 1004
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 281 INKCSENKRYKSNNVMKHKKLSSKMKASSFSYRAPKCS 394
++KCS+NK ++ ++K L + S S KCS
Sbjct: 186 VSKCSQNKSLDASKCSQNKSLDGSKCSQSKSLDGSKCS 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,337,446
Number of Sequences: 37544
Number of extensions: 363541
Number of successful extensions: 956
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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