Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a04
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197     32   0.38 
11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634           29   2.7  
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524...    28   8.1  

>10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197
          Length = 490

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 659 PIKSGSAQNSRCYNNRHVLLLSSARRGAVSVTGCFHSIRSSALS 528
           P+         CYN     LL   RRGA +VT   H++ S  L+
Sbjct: 354 PVHRSIQDTHDCYNGCAAFLLDRVRRGAAAVTLATHNVESGQLA 397


>11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634
          Length = 795

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = +3

Query: 408 AITRHLIS----PDKKFVLLVHQTGIGLDTLGLTV 500
           A+  HL+S    P ++F+ ++ +TGIG  TL LT+
Sbjct: 100 ALENHLLSHEHTPQQRFISILGETGIGKSTLMLTI 134


>01_05_0669 -
           24152057-24152110,24152224-24152308,24152401-24152486,
           24153129-24154341,24154441-24154529,24154607-24154639,
           24154674-24154859,24155290-24155380,24155588-24155622,
           24155736-24155817,24155968-24156020,24156404-24156469,
           24156752-24156820,24156821-24156984,24157925-24158432,
           24158543-24158602
          Length = 957

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 140 NILSCTFIYSCMLAVKQVGCVVYSIFPKI 226
           +IL    IY+C  AV Q GC   SI  K+
Sbjct: 239 DILCLQVIYNCCTAVIQKGCAAKSIVKKV 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,756
Number of Sequences: 37544
Number of extensions: 300434
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)