Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a02
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0591 + 18813557-18813663,18814332-18814392,18814526-188146...    30   1.5  
03_05_0821 - 27960414-27961253                                         29   3.6  
06_02_0087 - 11580046-11580261,11580495-11580620,11581530-115818...    29   4.7  
01_05_0135 + 18460416-18460482,18460614-18460942                       29   4.7  
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272...    28   6.2  

>09_04_0591 +
           18813557-18813663,18814332-18814392,18814526-18814639,
           18814923-18815054,18815380-18815774,18815896-18815995,
           18816099-18816158,18816240-18816326,18816511-18816639,
           18816888-18817187
          Length = 494

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 369 ALFKLLSNLLSAYLPTSQDKICHTVLSIRRRPYCKSATVVCNKTEWNSRPELSGKRRNSV 548
           +L   LS  +S Y+P    K+   +LS     YCK  +V    +E+ + P  S    ++ 
Sbjct: 149 SLVNFLSASISEYVPKISCKLSEDILSCIAAVYCKLGSVPLQDSEYITSPSPSVSSSSTF 208

Query: 549 YPQ 557
            P+
Sbjct: 209 SPR 211


>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 128 FLLHLRIQPDVRNHPRATRACHTAHN 205
           FLLH R+ P    HPRA RA    H+
Sbjct: 50  FLLHRRVVPLPSPHPRALRAVSALHS 75


>06_02_0087 -
           11580046-11580261,11580495-11580620,11581530-11581875,
           11582433-11582572,11583273-11583677
          Length = 410

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -2

Query: 547 TLFRRFPESSGLEFHSVLLQTTVADLQYGRLRIDNTV*HILS*LVGK*ADNKLDSSLKRA 368
           +L +  P S  L+  S L  T V D QYG   I+  +  + S    K ++++    L  +
Sbjct: 212 SLLQSLPRSVNLDNISALNMTFVNDPQYGNSSIEFDINGLFSSATAKLSNSQKHPQLSLS 271

Query: 367 CG 362
           CG
Sbjct: 272 CG 273


>01_05_0135 + 18460416-18460482,18460614-18460942
          Length = 131

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 86  IAILKTAVRSL*PRFLLHLRIQPDVRNHPRATRACHTAHNLWFTVVT 226
           I+  KT      PR LLHL + P  RN    TR C    +L    ++
Sbjct: 63  ISAAKTGRTPTAPRTLLHLPLPPSHRNRCAITRICQEICHLCLETIS 109


>06_03_0434 +
           20725996-20726026,20726300-20726947,20727168-20727230,
           20727300-20727458,20727750-20728247,20729068-20729321,
           20729448-20729829,20729938-20730204,20730530-20730789
          Length = 853

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 152 VGYEDVTRTGATANGPQSSG*QYCIFINFYPVLKFVI 42
           V  EDV R  A  N     G + C+F+  Y   KF I
Sbjct: 448 VNTEDVIRARANRNNNDDPGNRLCVFVRDYYCYKFQI 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,363,033
Number of Sequences: 37544
Number of extensions: 383172
Number of successful extensions: 885
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)