Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a02
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34257| Best HMM Match : DUF1172 (HMM E-Value=1.3)                   31   1.2  
SB_21719| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_30997| Best HMM Match : DUF1172 (HMM E-Value=0.38)                  30   2.1  
SB_57729| Best HMM Match : PADR1 (HMM E-Value=0.52)                    30   2.1  
SB_26379| Best HMM Match : HALZ (HMM E-Value=1.4)                      30   2.1  
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)                    29   3.6  
SB_9695| Best HMM Match : Gamma-BBH (HMM E-Value=2.5e-08)              28   6.4  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_34257| Best HMM Match : DUF1172 (HMM E-Value=1.3)
          Length = 304

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +1

Query: 439 PCYRYEDGRIVNPLPSSAIKRNGIQDQNFLESGGIAYIRKCWHNAIWSDHPLAIPVRPMK 618
           PC  Y     +NP P+++  +    D   L+S  +   R    + + + H    P+  +K
Sbjct: 200 PCQEYTIRANLNPGPTTSQNQRSRDDVKLLDSSDVYVNRNALRSCVQAGHSAKSPIGLLK 259

Query: 619 KL 624
           KL
Sbjct: 260 KL 261


>SB_21719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +1

Query: 439 PCYRYEDGRIVNPLPSSAIKRNGIQDQNFLESGGIAYIRKCWHNAIWSDHPLAIPVRPMK 618
           PC  Y     +NP P+++  +    D   L+S  +   R    + + + H    P+  +K
Sbjct: 249 PCQEYTIRANLNPGPTTSQNQRSRDDVKLLDSSDVYVNRNALRSCVQAGHSAKSPIGLLK 308

Query: 619 KL 624
           KL
Sbjct: 309 KL 310


>SB_30997| Best HMM Match : DUF1172 (HMM E-Value=0.38)
          Length = 505

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +1

Query: 439 PCYRYEDGRIVNPLPSSAIKRNGIQDQNFLESGGIAYIRKCWHNAIWSDHPLAIPVRPMK 618
           PC  Y     +NP P+++  +    D   L+S  +   R    + + + H    P+  +K
Sbjct: 239 PCQEYTIRANLNPGPTTSQNQRSRDDVKLLDSSDVYVNRNALRSCVQAGHSAKGPIGLLK 298

Query: 619 KL 624
           KL
Sbjct: 299 KL 300


>SB_57729| Best HMM Match : PADR1 (HMM E-Value=0.52)
          Length = 105

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 209 IDCGQCGKHG*HVGDSSHLVGYEDVTRTGATANGPQ 102
           I+C +C  H   V +S HLVG    + T +T+   Q
Sbjct: 70  IECSKCNSHQQSVDESRHLVGPGSKSTTDSTSRSSQ 105


>SB_26379| Best HMM Match : HALZ (HMM E-Value=1.4)
          Length = 421

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +1

Query: 439 PCYRYEDGRIVNPLPSSAIKRNGIQDQNFLESGGIAYIRKCWHNAIWSDHPLAIPVRPMK 618
           PC  Y     +NP P+++  +    D   L+S  +   R    + + + H    P+  +K
Sbjct: 270 PCQEYTIRANLNPGPTTSQNQRSRDDVKLLDSSDVYVNRNALRSCVQAGHSAKGPIGLLK 329

Query: 619 KL 624
           KL
Sbjct: 330 KL 331


>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
          Length = 1243

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 418 VKTKYVIPCYRYEDGRIVNPLPSSAIKRNGI-QDQNFLESGGIA 546
           VK +   PC+R  +  +   LPS++ +R G+ QD N + +  IA
Sbjct: 161 VKARNDPPCWRVSETALHERLPSASSEREGLRQDNNEMSTSPIA 204


>SB_9695| Best HMM Match : Gamma-BBH (HMM E-Value=2.5e-08)
          Length = 337

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +1

Query: 448 RYEDGRIVNPLPSSAIKRNGIQDQNFLESGGIAYIRKCWHNAIWSDHPL 594
           R++DG  V+  P++ + RN ++D+N   S  + Y ++ + +    DHP+
Sbjct: 35  RWQDGA-VSQFPTTWL-RNSVRDENIFNSKTLIYDQQKFTDFAAKDHPI 81


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 212 FTVVTLGRRHH*GGQVVVIARNLIAVIVTEIIAPLAKTE 328
           F++ ++ R HH  G ++ +A   + VIV+    P+ + E
Sbjct: 464 FSLFSMVRHHHFPGLIIYVASGAVMVIVSLFTKPVPREE 502


>SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 275 NLIAVIVTEIIAPLAKTET-PHRPLVVRIQPTSPLQTAVQLVVSLLAN 415
           +++A+ +  +   L +T+  PH  L   +QP   L+T VQL  +L  N
Sbjct: 790 SIVAICIIMVWTELHQTKAHPHNALGTNVQPRDALRTNVQLRNALGTN 837


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,588,703
Number of Sequences: 59808
Number of extensions: 461087
Number of successful extensions: 1212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)