Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a02
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.70 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.6  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 623 SFFIGLTGIASGWSLQIALCQHLRIYAIPPLSRKFWS*IPFRFI 492
           S+   LT +A      +A+C  LR+Y I  L R      P RFI
Sbjct: 125 SYVSVLTIVAFSMERYLAICHPLRVYTISGLKR------PIRFI 162


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 548 ISANAGTMRFGVTTHSLYRLDR 613
           ISAN  +  FG+ + +LY++ R
Sbjct: 482 ISANKASKAFGIPSSTLYKIAR 503


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 559 CWHNAIWSDHPL 594
           CW   IW+DH L
Sbjct: 56  CWVTQIWTDHHL 67


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 166 IPHIWLDTKM*QEPGLQRTDRSLQD 92
           I H++ D ++  EP   RTD S  D
Sbjct: 225 INHMFEDARLLDEPSANRTDLSKDD 249


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 592 LAIPVRPMKKLPAKKRTR*WVQKFPVTAFKRNGM 693
           LAIPVR    LP +KR +  ++   +   +RNG+
Sbjct: 454 LAIPVRETLILPPRKRCKMILESMEI---ERNGL 484


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 288 TAIKFLAITTT*PPQWCLRPS 226
           TA     +T   PP+W L P+
Sbjct: 666 TASHSTTLTVNVPPRWILEPT 686


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,371
Number of Sequences: 438
Number of extensions: 4292
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)