Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a01
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204187-1|AAO39191.1|  156|Caenorhabditis elegans nuclear recep...    28   5.9  
AL032639-1|CAA21638.1|  373|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF016438-9|AAB65891.2|  394|Caenorhabditis elegans Nuclear hormo...    28   5.9  
AC024751-5|AAK21514.2|  220|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF106584-3|AAC78223.1|   81|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AY204187-1|AAO39191.1|  156|Caenorhabditis elegans nuclear receptor
           NHR-103 protein.
          Length = 156

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 166 STWYSRRMQCVTDACVVFKLSVITCVTFRLNE 261
           +TW  +++QCV   C +F+     C   RL +
Sbjct: 39  ATWSRKKVQCVKGTCKIFEDGKFNCKQCRLKK 70


>AL032639-1|CAA21638.1|  373|Caenorhabditis elegans Hypothetical
           protein F18A11.5 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +2

Query: 545 EAPHHRIPLPHVAGHRVRVVLDQCIRNQTDTSS 643
           +A ++ IP+P+V G  +++V+  CIR++ +  S
Sbjct: 263 KASNYVIPVPNVKGITMKMVVTWCIRHRVEVPS 295


>AF016438-9|AAB65891.2|  394|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 103 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 166 STWYSRRMQCVTDACVVFKLSVITCVTFRLNE 261
           +TW  +++QCV   C +F+     C   RL +
Sbjct: 39  ATWSRKKVQCVKGTCKIFEDGKFNCKQCRLKK 70


>AC024751-5|AAK21514.2|  220|Caenorhabditis elegans Hypothetical
           protein Y18H1A.4 protein.
          Length = 220

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 692 VFEDAGRVVRRGG*LCESLYLFD 624
           + ED G  V+  G LCE+LYL D
Sbjct: 79  IIEDKGMKVKADGGLCEALYLCD 101


>AF106584-3|AAC78223.1|   81|Caenorhabditis elegans Hypothetical
           protein F54A5.3b protein.
          Length = 81

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 578 VAGHRVRVVLDQCIRNQTDTSSRTASHLASPLVQHPRRHSKLK 706
           V+  RV+VV  +CI++   T   TA+   +P+V  P  H  +K
Sbjct: 37  VSEMRVQVV-SECIQHVAATVGVTAAREINPVVSRPTLHGSMK 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,902,310
Number of Sequences: 27780
Number of extensions: 324527
Number of successful extensions: 988
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)