Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5p24
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0651 + 30644241-30644615,30644751-30644858                       34   0.084
06_01_1033 - 8080179-8080685                                           33   0.15 
07_01_0793 - 6169661-6169936,6170942-6171025,6171473-6171590,617...    30   1.4  
02_04_0020 - 18956282-18956461,18956591-18956740,18957934-189580...    28   5.5  
06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168           27   9.7  

>02_05_0651 + 30644241-30644615,30644751-30644858
          Length = 160

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +3

Query: 339 MVKEKPNSIRIYDDEGFRRRAACIC--VRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXX 512
           +V  +   ++ Y   G R    CI   VRS  E EVL++TS ++    +           
Sbjct: 4   LVARQGRELQRYTSAGGRIVVGCIPYRVRSGGEMEVLVITS-QKGHGMMFPKGGWELDES 62

Query: 513 XXXTAMREVLEEAGVIGKLGRCLGVFENREHKH 611
               A RE LEEAGV G     LG +  +  ++
Sbjct: 63  MDEAARREALEEAGVRGDTETSLGCWYYKSRRY 95


>06_01_1033 - 8080179-8080685
          Length = 168

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
 Frame = +3

Query: 339 MVKEKPNSIRIYDDE-GFRRRAACIC--VRSDAE-TEVLLVTSSRRP----DNWIXXXXX 494
           MV  +   ++ Y D  G R    CI   VR D    EVL+++S ++     D  +     
Sbjct: 5   MVARQGRELQRYSDNTGGRMVVGCIPYRVRGDGGGVEVLVISSQKKGAAAGDVVMFPKGG 64

Query: 495 XXXXXXXXXTAMREVLEEAGVIGKLGRCLGVFENREHKH 611
                     A RE LEEAGV+G++G  LG +  R  ++
Sbjct: 65  WELDESVDEAARREALEEAGVLGEIGASLGRWCYRSRRY 103


>07_01_0793 -
           6169661-6169936,6170942-6171025,6171473-6171590,
           6172917-6172987
          Length = 182

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 525 AMREVLEEAGVIGKLGRCLGVFENREHKHRNR 620
           A RE +EEAGV G L + LG ++ +   H+++
Sbjct: 76  AAREAIEEAGVRGDLVQLLGFYDFKSKTHQDK 107


>02_04_0020 -
           18956282-18956461,18956591-18956740,18957934-18958017,
           18958283-18958403,18958525-18958604
          Length = 204

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = +3

Query: 429 ETEVLLVTSSRRPDNWIXXXXXXXXXXXXXXTAMREVLEEAGVIGKLGR-CLG--VFENR 599
           + EVL+V++  R D  +               A RE +EEAGV G + R  LG  VF+++
Sbjct: 49  QVEVLMVSTPNRAD-MVFPKGGWEDDEEVYEAASREAMEEAGVKGIVNRTTLGHWVFKSK 107

Query: 600 EHKHRN--RGLC 629
             ++ +  RG C
Sbjct: 108 SSQNSSSPRGAC 119


>06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168
          Length = 536

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 554 SGFLKYLPHRSDRRLLFRLYSPARH 480
           +G L + PH  DRR LFR  SP RH
Sbjct: 181 TGGLSWEPHH-DRRSLFRPRSPPRH 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,021,974
Number of Sequences: 37544
Number of extensions: 269818
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)