Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5p14
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43219| Best HMM Match : zf-CCHC (HMM E-Value=0.0056)                33   0.27 
SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)         32   0.47 
SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)                  30   1.4  
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048)       30   1.4  
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)                30   1.9  
SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           29   2.5  
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       29   2.5  
SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)                29   4.4  
SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)             29   4.4  
SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)                   29   4.4  
SB_47476| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  28   5.8  
SB_20584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019)                 28   5.8  
SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)               28   5.8  
SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)                    28   5.8  

>SB_43219| Best HMM Match : zf-CCHC (HMM E-Value=0.0056)
          Length = 693

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +1

Query: 322 IEPIQPELDRSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPV 501
           I P++   +  T  +  Q   S  + Q  TVNS E+    N  T +     +  +DC  V
Sbjct: 188 INPVESNFEDKTKSNNSQQARSSRLYQTSTVNSSEDQRAVNNLTCVYCGGAQKGVDCAKV 247


>SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = +1

Query: 322 IEPIQPELDRSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPV 501
           I P++   +  T  +  Q   S  + Q  TVNS E+    N  T +        +DC  V
Sbjct: 211 INPVESNFEDKTKSNNSQQARSSRLYQTSTVNSSEDQRAVNNLTCVYCGGAHKGVDCAKV 270


>SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)
          Length = 402

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +1

Query: 361 ESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAPNSRPQTPK 540
           E   +  ES   EQ + + SEE++  +++ T+     K+ S+ C P  K    S P TP 
Sbjct: 274 EEEEEAAESQEGEQAIKLFSEEDLMEEDKSTSCIPHTKDRSIPCTPHTKD--RSTPCTPH 331

Query: 541 T 543
           T
Sbjct: 332 T 332


>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = +3

Query: 36  IIHVFCLNI-------LNQNGQHQQSL*NKIKRSTDPASSDSGVSCTRRPECYESKSIVD 194
           I+ VFC +I        + N  +Q S    +   +    SD  +SC  RP   ++KS   
Sbjct: 16  ILEVFCYDIPYVDPSKCSSNQYYQFSSLRCVDCGSGQTQSDDKLSCNCRPGFKKTKSDGG 75

Query: 195 PKTITKSCSSVAG 233
           P  + +SCS+ +G
Sbjct: 76  PNLLCESCSTGSG 88


>SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048)
          Length = 1347

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/60 (25%), Positives = 24/60 (40%)
 Frame = +1

Query: 322 IEPIQPELDRSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPV 501
           I P++   +  T  +  Q   S  + Q  TVNS E+    N  + +        +DC  V
Sbjct: 616 INPVESNFEDKTKSNNSQQARSSRLYQTSTVNSSEDQRAVNNLSCVYCGGARKGVDCAKV 675


>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
          Length = 1669

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +1

Query: 256 ITEHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMPQHTESFVIE----QMVTVNSE 423
           +TE   HK +S S + V +           D   TE   QH++   ++    ++V   SE
Sbjct: 197 VTEVTQHKKDSTSYVDVTDVTQCRSEDDTTDIDVTEVTQQHSKDKTVDIDVAEVVENPSE 256

Query: 424 EEMELKNEQTALESDNKENSLDCEP 498
           E+++++ + T  ++ + EN    +P
Sbjct: 257 EDVDVEIDATHHDASHCENDFATQP 281


>SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 586 DDLMVLAFVADCLVKF*EFVGGYLAQILVQVHNPKNFLYCQIQERFVRFSIP 431
           D L+   F+    +K    + GY AQI++   NPK+     I+ +  RF +P
Sbjct: 127 DSLVRGKFLKPVSIKRHAILDGYFAQIIIGDFNPKSHKRGYIENKLGRFFVP 178


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +1

Query: 325 EPIQPELDRSTT---ESMPQHTESFVIEQMVTVN-SEEEMELKNEQTALESDNKENSLD 489
           +P+Q +L+ S+T   E+ P H E+ + E  +TV   +E+ E   E     SD +E+  D
Sbjct: 793 KPVQEQLNYSSTDKKEATPDHKEANLDETRITVKPGQEQNEANQEYHNRGSDPQESISD 851


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 132  SDSGVSCTRRPECYESKSIVDPKTITKSCSSVAGAFEDWKSYYGACY 272
            S  GV+CT   EC       D K +  +C S A       S+Y  C+
Sbjct: 906  SGDGVNCTDIDECNSETLSGDHKHLAHNCHSDANCTNTQGSFYCTCH 952


>SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)
          Length = 607

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 314 NVTLNRYSQN*TGQLRNRCHSILSHLLLNKWLR*ILKKKWN*KTNKPLLNLTIKKILWIV 493
           N   N+ +   T ++ N+  + +++ + NK    +  KK N  TNK   N+T K    + 
Sbjct: 123 NKVANKVTNKVTNKVTNKVTNKVTNKVANKLTNNVTNKKTNKMTNKVTYNVTNKVTKEVT 182

Query: 494 NLYQN 508
           N   N
Sbjct: 183 NKMTN 187


>SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
          Length = 264

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 534 SLWAAIWRRFWYRFTIQRIFFIV 466
           SL  AIWR F +R+T+  IF I+
Sbjct: 12  SLTKAIWRTFGFRYTLLGIFAII 34


>SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)
          Length = 1205

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/85 (20%), Positives = 34/85 (40%)
 Frame = +1

Query: 256  ITEHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMPQHTESFVIEQMVTVNSEEEME 435
            +T H T  +  +S      E   E I   + R T ++   H    +    + + +E ++ 
Sbjct: 781  LTAHATSTLRLMSGQAANAERQ-ERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIG 839

Query: 436  LKNEQTALESDNKENSLDCEPVPKS 510
            L+ +    + D+      C P PK+
Sbjct: 840  LQRDDVFRQQDHVSKLATCLPFPKN 864


>SB_47476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/85 (20%), Positives = 34/85 (40%)
 Frame = +1

Query: 256 ITEHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMPQHTESFVIEQMVTVNSEEEME 435
           +T H T  +  +S      E   E I   + R T ++   H    +    + + +E ++ 
Sbjct: 22  LTAHATSTLRLMSGQAANAERQ-ERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIG 80

Query: 436 LKNEQTALESDNKENSLDCEPVPKS 510
           L+ +    + D+      C P PK+
Sbjct: 81  LQRDDVFRQQDHVSKLATCLPSPKN 105


>SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/85 (20%), Positives = 34/85 (40%)
 Frame = +1

Query: 256 ITEHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMPQHTESFVIEQMVTVNSEEEME 435
           +T H T  +  +S      E   E I   + R T ++   H    +    + + +E ++ 
Sbjct: 63  LTAHATSTLRLMSGQAANAERQ-ERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIG 121

Query: 436 LKNEQTALESDNKENSLDCEPVPKS 510
           L+ +    + D+      C P PK+
Sbjct: 122 LQRDDVFRQQDHVSKLATCLPSPKN 146


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 434  SISSSEFTVTICSITNDSVCCGIDSVVDRSNSGCIGSM 321
            +I+SS   +T    TN +   GID+ + RSNS  + S+
Sbjct: 3118 AITSSALIITTIKATNGASSPGIDNTIARSNSIALHSI 3155


>SB_20584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/85 (20%), Positives = 34/85 (40%)
 Frame = +1

Query: 256 ITEHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMPQHTESFVIEQMVTVNSEEEME 435
           +T H T  +  +S      E   E I   + R T ++   H    +    + + +E ++ 
Sbjct: 63  LTAHATSTLRLMSGQAANAERQ-ERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIG 121

Query: 436 LKNEQTALESDNKENSLDCEPVPKS 510
           L+ +    + D+      C P PK+
Sbjct: 122 LQRDDVFRQQDHVSKLATCLPSPKN 146


>SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
          Length = 1234

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 427 EMELKNEQTALESDNKENSLDCEPVPKSAPNSRPQTPK 540
           E+EL  + TA+         DC  +P+S PN  P+T K
Sbjct: 666 EVELLRQSTAMTVSVTVQKYDCSGLPQSCPN-LPETEK 702


>SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)
          Length = 1063

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/82 (26%), Positives = 38/82 (46%)
 Frame = +1

Query: 292 SDMKVQNECYIEPIQPELDRSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDN 471
           SDM + N+ YIE   P +DRS     P   +S + +     +S+        +T++  D 
Sbjct: 443 SDMALSNDSYIEESSP-IDRSA--DTPTFDDSAIQDVTRPSSSDYNSFEPLTKTSVVEDL 499

Query: 472 KENSLDCEPVPKSAPNSRPQTP 537
            E+S D   + ++A  S  + P
Sbjct: 500 AESSKDASILDQNADTSAVKEP 521


>SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)
          Length = 642

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/82 (26%), Positives = 38/82 (46%)
 Frame = +1

Query: 292 SDMKVQNECYIEPIQPELDRSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDN 471
           SDM + N+ YIE   P +DRS     P   +S + +     +S+        +T++  D 
Sbjct: 298 SDMALSNDSYIEESSP-IDRSA--DTPTFDDSAIQDVTRPSSSDYNSFEPLTKTSVVEDL 354

Query: 472 KENSLDCEPVPKSAPNSRPQTP 537
            E+S D   + ++A  S  + P
Sbjct: 355 AESSKDASILDQNADTSAVKEP 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.130    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,351,611
Number of Sequences: 59808
Number of extensions: 392147
Number of successful extensions: 1298
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)