Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5p03
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352           27   7.3  
01_05_0007 - 17017106-17017804,17017936-17018025                       27   7.3  

>06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352
          Length = 563

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +2

Query: 251 LGLIPILLLNVQ--SSLFRDSCLRNVF--NTGFFVGGPFRSSEM 370
           L L+  L LN++  S  ++D CLRNVF  N   +V    RS ++
Sbjct: 394 LTLLTRLQLNIEEKSKSYKDECLRNVFLMNNAMYVLEKARSPDL 437


>01_05_0007 - 17017106-17017804,17017936-17018025
          Length = 262

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 481 WSP*TSTFIFSYI-AIFRPSSI*CEIAQGRDYTLSFSRHF*GSEWTSNKKTRIKHIS*T 308
           W     T  F+ + A+FR   I C +   +DY     R F  + W +   + +K +S T
Sbjct: 87  WRNINETLEFTSLQALFRAVGIDCIVIMAQDYDEELIRQFYATTWVAGDCSEMKWMSHT 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,423
Number of Sequences: 37544
Number of extensions: 212642
Number of successful extensions: 377
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)