Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5p03
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-10|AAN65328.1|  558|Caenorhabditis elegans Biotin protein...    28   5.0  
U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein ...    28   5.0  
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    28   5.0  
AY601658-1|AAS98223.1|  558|Caenorhabditis elegans biotin protei...    28   5.0  
AY601657-1|AAS98222.1|  558|Caenorhabditis elegans biotin protei...    28   5.0  
AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protei...    28   5.0  

>U23139-10|AAN65328.1|  558|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform c protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -1

Query: 399 EGTTRFRFPAISEDRNGPPTKKPVLNTFLKHESRNNEL*TFNNRIGIRPKKSDIYL 232
           E   +F +     + NGP T K   + +  H  +   L  FN R+ IR    D YL
Sbjct: 471 ETINKFTYYMKDYEDNGPETFKKKYHEYWLHSQQEVLLSDFNERVTIRGIDDDGYL 526


>U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform b protein.
          Length = 632

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -1

Query: 399 EGTTRFRFPAISEDRNGPPTKKPVLNTFLKHESRNNEL*TFNNRIGIRPKKSDIYL 232
           E   +F +     + NGP T K   + +  H  +   L  FN R+ IR    D YL
Sbjct: 545 ETINKFTYYMKDYEDNGPETFKKKYHEYWLHSQQEVLLSDFNERVTIRGIDDDGYL 600


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
            ligase protein 1,isoform a protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -1

Query: 399  EGTTRFRFPAISEDRNGPPTKKPVLNTFLKHESRNNEL*TFNNRIGIRPKKSDIYL 232
            E   +F +     + NGP T K   + +  H  +   L  FN R+ IR    D YL
Sbjct: 964  ETINKFTYYMKDYEDNGPETFKKKYHEYWLHSQQEVLLSDFNERVTIRGIDDDGYL 1019


>AY601658-1|AAS98223.1|  558|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (62.5 kD) alternative
           variant d protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -1

Query: 399 EGTTRFRFPAISEDRNGPPTKKPVLNTFLKHESRNNEL*TFNNRIGIRPKKSDIYL 232
           E   +F +     + NGP T K   + +  H  +   L  FN R+ IR    D YL
Sbjct: 471 ETINKFTYYMKDYEDNGPETFKKKYHEYWLHSQQEVLLSDFNERVTIRGIDDDGYL 526


>AY601657-1|AAS98222.1|  558|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (62.5 kD) alternative
           variant c protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -1

Query: 399 EGTTRFRFPAISEDRNGPPTKKPVLNTFLKHESRNNEL*TFNNRIGIRPKKSDIYL 232
           E   +F +     + NGP T K   + +  H  +   L  FN R+ IR    D YL
Sbjct: 471 ETINKFTYYMKDYEDNGPETFKKKYHEYWLHSQQEVLLSDFNERVTIRGIDDDGYL 526


>AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (70.9 kD) alternative
           variant b protein.
          Length = 632

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -1

Query: 399 EGTTRFRFPAISEDRNGPPTKKPVLNTFLKHESRNNEL*TFNNRIGIRPKKSDIYL 232
           E   +F +     + NGP T K   + +  H  +   L  FN R+ IR    D YL
Sbjct: 545 ETINKFTYYMKDYEDNGPETFKKKYHEYWLHSQQEVLLSDFNERVTIRGIDDDGYL 600


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,939,287
Number of Sequences: 27780
Number of extensions: 203141
Number of successful extensions: 347
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)