Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5p02
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.56 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.97 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   1.4  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   2.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 419 EAEPFINKLRKTTATPSTTKVNKGKQLNSNWRQKHEEFI 535
           EA   ++KL KT  TP+ + +    +L  N +  +E+F+
Sbjct: 526 EAANIMSKLPKTVRTPTDSYIRSFFELLQNPKVSNEQFL 564


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +1

Query: 481  EQRQAIEQQLATKTRRVHPGNTSGETSAGTFECWR*AERSAAPSAVGE 624
            +Q+Q  +QQ      R   G    ETSAGT      A+ S  P  V E
Sbjct: 1224 QQQQQQQQQQHQAREREGVGAGIAETSAGTSNSRGAAQMSKVPRDVSE 1271


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect(2) = 1.4
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +2

Query: 641 CPHCNRRFNQGRCRATHSEVR 703
           C  CNRR+       TH  ++
Sbjct: 38  CEFCNRRYRTKNSLTTHKSLQ 58



 Score = 20.6 bits (41), Expect(2) = 1.4
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 638 QCPHCNRRFN 667
           +CP+C R F+
Sbjct: 7   ECPYCRRNFS 16


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 638 QCPHCNRRFNQGRCRATH 691
           +CP C++RF +     TH
Sbjct: 11  ECPECHKRFTRDHHLKTH 28


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 140 SETNKTRGAMQRPANTTPRKPPVKANSAGSGTPKG 244
           +ET +        A  TP  P V   SA +GT  G
Sbjct: 35  AETPEHLAGTSTTAAATPTPPSVPVGSAVAGTAGG 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,419
Number of Sequences: 438
Number of extensions: 3234
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)