Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5p01
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    28   1.1  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   2.0  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    27   3.4  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   4.5  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   6.0  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   7.9  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.9  

>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 483 ELVQSRNRANPYNPN*TKRTKKIIQNPFQKWLLHN--FEISKSSLSYAI 623
           ++++  + ++ +NP+ +++  K+  + F  W+L      I K+S  YAI
Sbjct: 397 DIIEEEDDSDEFNPSVSRKKAKLTSSQFSNWMLVTGVTGIGKTSCLYAI 445


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 453 GSGTLTLSAVELVQSRNRANPYNPN*TKRTKKIIQNPFQK 572
           G  T+ +   ++ Q   RA  +NPN +K++  I+   +QK
Sbjct: 419 GVSTIDIPVPQIKQIAGRAGRHNPNGSKQSAGIVTTLYQK 458


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 190 LRRFDVKEKQRKRQSVTEQSRCPSNG 267
           L RF VKEK R  +      +CPS G
Sbjct: 30  LERFRVKEKSRTFKDCVNVYQCPSKG 55


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 540 TKKIIQNPFQK--WLLHNFEISKSSL 611
           T  +I NP ++  W LHNFE SK  L
Sbjct: 284 TSSMITNPARQAGWKLHNFEDSKDVL 309


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +3

Query: 381 MQTLWLMSEMS*NFLV----LQNSVDQVGSGTLTLSAVELVQSRNRANPYNPN*TKRTKK 548
           +Q + L+S+M+ N +       N + Q G+   T   +  V    + NP NP+ T   + 
Sbjct: 461 LQQVQLLSQMAGNQMANIQYTMNGMQQTGASPNTALNISQVNMYAQNNPVNPSTTNPFQN 520

Query: 549 IIQNP 563
            ++ P
Sbjct: 521 FLRQP 525


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 360 MTTSTARESPPKLFLSVPISTLYGVFGSTNASITWT 253
           MTT+T    P +   +V  ++     GS++ASIT T
Sbjct: 574 MTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 49   GVIVRVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAE 168
            GVIV + R+    LQS+A   F  + ++R+  + + +P E
Sbjct: 1557 GVIVGIDRKSGKPLQSHAKAPFMATFKIRKEKLVDADPEE 1596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,839
Number of Sequences: 5004
Number of extensions: 47711
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)