Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5o24
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    29   0.60 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   1.4  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   1.4  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    27   1.8  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    27   2.4  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   3.2  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   4.2  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.2  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   5.6  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   9.8  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   9.8  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 299 YNHHVIYKYSYQLRLSF*WDQSH 231
           Y +H  Y+Y Y +R SF W+ S+
Sbjct: 269 YPYHEAYEYYYYIRSSFSWEDSY 291


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 26  IEKSVGN---KRCYIDPSDWERETASILRSTISV 118
           +E+S+G+    R   DP +W+RET  IL    SV
Sbjct: 720 MERSMGSAPDSRVAFDPDEWQRETLDILDRDESV 753


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 95  ILRSTISVQNKQANKTETALTFRQTKSRLNA-KTRSSLDL 211
           ++ STI  Q+    KTETA T  +     N  K +S++D+
Sbjct: 11  LIESTIKHQSTNYTKTETATTSHEVSENANEHKGKSNIDI 50


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +2

Query: 128 QANKTETALTFR---QTKSRLNAKTRSSLDLYNLRSSDDSDPIKN 253
           QA     ALTF     +K  LN+K    LD+++ R + D +P+++
Sbjct: 261 QATDAGVALTFSFPPPSKDVLNSKIELGLDMWDERFATDMEPLQS 305


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 290 DDCKNVKSISFSKSCTSIYAPYRVVVTPLNDVPVNTN---FKRKNTSQ 424
           D    +K+++F++ C+S+ AP+ + V  + D P + +   F   NT Q
Sbjct: 370 DSSVKIKNMAFAQPCSSLSAPFVLNVITVADGPCSFSLSIFDDGNTEQ 417


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 147 VSVLFACLFCTDIVDLRILAVSRSQSDGSM*QRLF 43
           VS+LFAC    D+  L IL+   ++   +M  RLF
Sbjct: 246 VSILFACQLVLDLALLLILSWGYTRYSTNMRDRLF 280


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 387 GTSFRGVTTTLYGAYIEVQLFEKEIDF 307
           G SF+G+    +G  I++ LFE+++ F
Sbjct: 890 GWSFKGIYLIDFGRGIDLSLFEEKVKF 916


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 195 LVFALSLDLV*RKVKAVSVLFACLFCTDI 109
           L+F ++LD    ++   SVLF C FC DI
Sbjct: 89  LLFWINLDSADSRI---SVLFQCFFCIDI 114


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 20/97 (20%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
 Frame = +2

Query: 26  IEKSVGNKRCYIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSL 205
           +EK   + R  ++    E   A      +SV N+Q  ++   ++      ++NA+ R  +
Sbjct: 184 LEKLFADSREQLETKCKELAAAEQQLQELSVHNQQLEESIKQVSSSIELEKINAEQRLQI 243

Query: 206 -DLYNLRSSDDSDPIKNLSAIGTNICKLRDDCKNVKS 313
            +L  L+++ + + I+ LS+   N+  L+++  +++S
Sbjct: 244 SELEKLKAAQE-ERIEKLSSNNRNVEILKEEKNDLES 279


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 353 MVHISKYNSSRKKL--ILHFYNHHVIYKYSY 267
           M+H  KY S+   +    H   HH+ + Y+Y
Sbjct: 206 MIHDGKYISNNPIINGAAHHNGHHIYFNYNY 236


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 38  VGNKRCYIDPSDWERETAS 94
           VG KRC +  + W+ ET S
Sbjct: 410 VGEKRCAVADTYWQTETGS 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,556
Number of Sequences: 5004
Number of extensions: 37842
Number of successful extensions: 108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)