Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5o24
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0383 - 24851496-24851681,24851785-24851882,24851964-248520...    31   0.81 
03_06_0462 + 34113877-34114463,34117294-34117466,34118049-341182...    29   3.3  
07_03_1341 + 25890716-25890937,25890994-25891101                       28   4.3  
06_03_0728 + 23913085-23913429                                         27   7.5  
12_02_0474 + 19482150-19482152,19482205-19482336,19482513-194826...    27   10.0 
08_01_0098 - 700443-700660,701112-701268,701586-701678,701763-70...    27   10.0 
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316...    27   10.0 

>04_04_0383 -
           24851496-24851681,24851785-24851882,24851964-24852063,
           24852741-24852899
          Length = 180

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = -2

Query: 308 LHFYNHHVIYKYSYQL 261
           LHFY++HV+Y +SY++
Sbjct: 61  LHFYDYHVVYSFSYKV 76


>03_06_0462 +
           34113877-34114463,34117294-34117466,34118049-34118233,
           34118865-34118957
          Length = 345

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +2

Query: 98  LRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSDDSDPIK----NLSAI 265
           LR  ++    +A KTE+     +T  R   K R++++      +D+ +  K    N+ A+
Sbjct: 164 LRGQLARFQAEAGKTESVRAQVETMRREIQKGRAAVEFEKKAHADNLEQSKAMEKNMIAV 223

Query: 266 GTNICKLRDDCKNVKSISFSKSCTS 340
            + I KLR D  N +  + + + T+
Sbjct: 224 ASEIEKLRGDLANAEKRATAVTATA 248


>07_03_1341 + 25890716-25890937,25890994-25891101
          Length = 109

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 41  GNKRCYIDPSDWERETASILRS-TISVQNKQANKTETALTFRQTKSRLNAKTRSS 202
           GN    + P +  R  +S L S TIS+    A +    L   Q + R+NA+ +SS
Sbjct: 10  GNDAIGLTPGELNRFNSSFLSSDTISISQSYAIRLAIYLQRIQQRGRMNAEEKSS 64


>06_03_0728 + 23913085-23913429
          Length = 114

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 62  DPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLR 223
           DPSDW    AS+ R    ++ ++  + E     R+  + + A    S   +N+R
Sbjct: 16  DPSDWIGAVASVFRMLGEMREREKREEEELREERELAAWVAATRAESYARFNMR 69


>12_02_0474 +
           19482150-19482152,19482205-19482336,19482513-19482602,
           19482649-19482708,19482959-19483058,19483137-19483234,
           19483351-19483525,19484167-19484270
          Length = 253

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -2

Query: 308 LHFYNHHVIYKYSYQL 261
           +H Y++HV+Y +SY++
Sbjct: 103 VHIYDYHVVYSFSYKV 118


>08_01_0098 -
           700443-700660,701112-701268,701586-701678,701763-702149,
           702755-702829,703486-703609,703693-703832,703904-703993,
           704254-704298,704917-705042,705138-705272,705966-706451,
           706539-706596,706728-706855,707209-707463
          Length = 838

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 27/110 (24%), Positives = 46/110 (41%)
 Frame = +2

Query: 92  SILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSDDSDPIKNLSAIGT 271
           SIL    S + +Q N  +    F    S + A  + + ++YN+R   + D + N  A   
Sbjct: 244 SILAEYKSWEAEQGNANDPTSNFDGVPSNVVAAYKKATEMYNVRKQYE-DQLSNADASDD 302

Query: 272 NICKLRDDCKNVKSISFSKSCTSIYAPYRVVVTPLNDVPVNTNFKRKNTS 421
           +  KL +  K +K    S     +   Y   V    ++PV+T+     TS
Sbjct: 303 D--KLEEFLKYIKFEESSGDPARVQVLYERAVA---ELPVSTDLWMGYTS 347


>05_01_0400 -
           3159370-3159385,3159599-3159703,3159972-3160006,
           3160134-3160272,3160457-3160605,3161052-3161173,
           3161296-3161417,3161779-3162033,3162108-3162271,
           3162311-3162489,3162593-3162767,3162916-3163002,
           3163144-3163446,3163539-3163594,3163813-3163894,
           3163972-3164039,3164779-3164835,3164926-3164991,
           3165121-3165192,3167363-3167459
          Length = 782

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 35  SVGNKRCYIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDL 211
           S+G KR +   S+WE +   + R    +  + A     + T     ++ NAK R SLD+
Sbjct: 694 SIGAKRIHARLSEWEMKHGQLFRPCSYLSERAAEGVPLSST-----AKNNAKARISLDV 747


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,130,948
Number of Sequences: 37544
Number of extensions: 186279
Number of successful extensions: 459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)