Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5o24
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   0.89 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   0.89 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   0.89 
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   4.8  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   4.8  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   8.3  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2   ARRIEKPKIEKSVGNKRCYID---PSDWERETASILRSTISVQNKQANKTETALTFRQTK 172
           A+  E+PK+ K +  K   +D   P+  ER    + +    V  +  + T T L FR   
Sbjct: 360 AKAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRYMVWRETISSTAT-LGFRVEG 418

Query: 173 SRLNAKTRSSLDLYNLRSSD 232
            +L A   SS D    R+ +
Sbjct: 419 IKL-AHGGSSKDFKTTRTRE 437


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2   ARRIEKPKIEKSVGNKRCYID---PSDWERETASILRSTISVQNKQANKTETALTFRQTK 172
           A+  E+PK+ K +  K   +D   P+  ER    + +    V  +  + T T L FR   
Sbjct: 275 AKAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRYMVWRETISSTAT-LGFRVEG 333

Query: 173 SRLNAKTRSSLDLYNLRSSD 232
            +L A   SS D    R+ +
Sbjct: 334 IKL-AHGGSSKDFKTTRTRE 352


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2   ARRIEKPKIEKSVGNKRCYID---PSDWERETASILRSTISVQNKQANKTETALTFRQTK 172
           A+  E+PK+ K +  K   +D   P+  ER    + +    V  +  + T T L FR   
Sbjct: 594 AKAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRYMVWRETISSTAT-LGFRVEG 652

Query: 173 SRLNAKTRSSLDLYNLRSSD 232
            +L A   SS D    R+ +
Sbjct: 653 IKL-AHGGSSKDFKTTRTRE 671


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 368 TPLNDVPVNTNFK 406
           TPLN++P N  F+
Sbjct: 71  TPLNELPANKRFQ 83


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 368 TPLNDVPVNTNFK 406
           TPLN++P N  F+
Sbjct: 71  TPLNELPANKRFQ 83


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 430 SSLRCIFSFKICINRYIV 377
           S L  +FSF I ++ YIV
Sbjct: 63  SGLFSVFSFLILVSSYIV 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,677
Number of Sequences: 438
Number of extensions: 2297
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)