Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5o23
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    30   0.27 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    27   3.3  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    27   3.3  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   4.4  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    26   5.8  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   7.7  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.7  

>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -2

Query: 641 FAASVDYTFTKHFPATIRDFKSTCLLCIHYFWHYYIAYIKHFYSSIH 501
           FA  + Y F    PA    F    +    YFWH Y+ Y K  Y+ IH
Sbjct: 119 FAPKLAYNFI--VPAFQYFFAFFIIDSWQYFWHRYLHYNKKLYNMIH 163


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 632 SVDYTFTKHFPATIRDFKSTCLLCIHYF 549
           SVD +  +H+  T   ++ TCL  I YF
Sbjct: 317 SVDESGKQHYLCTTTAYRQTCLRVIEYF 344


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 8   YYVMLFFFFRNYLMHELWSNCIPNLLQRTCN 100
           ++VML+ ++ ++L   LW+  + + L+  CN
Sbjct: 250 HHVMLYHYYPSFLQSALWT-AVSSYLEERCN 279


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 345 KSLDREKNVSENFCDGC--ECSKVDEVKDTKLK 437
           +SL + KN  EN       +C K+DE  D +LK
Sbjct: 456 ESLQQHKNTIENQLAAANWDCQKIDEFMDAELK 488


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 285 RRIGEGYDDPAPQSDANSW 341
           R IG  +DDP  QSD   W
Sbjct: 70  RLIGRKFDDPEVQSDMKHW 88


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 623 YTFTKHFPATIRDFKSTCLLCIHYFWHYY 537
           Y F KH  AT  + ++T L  I  F+ +Y
Sbjct: 233 YLFDKHIDATGYEIEATSLFVIGNFFFFY 261


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 631 PLTIHSPSISLQLLGISNLLVC 566
           P+ +HS SIS  LL + N L C
Sbjct: 23  PIFVHSGSISAMLLTLVNALEC 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,609
Number of Sequences: 5004
Number of extensions: 47114
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)