Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5o23
         (681 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283408-1|AAL38109.1| 1537|Homo sapiens candidate tumor suppres...    32   2.2  
AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein...    32   2.2  
AC068195-1|AAX93243.1| 1126|Homo sapiens unknown protein.              32   2.2  
AB209707-1|BAD92944.1| 1720|Homo sapiens low density lipoprotein...    32   2.2  

>AF283408-1|AAL38109.1| 1537|Homo sapiens candidate tumor suppressor
            protein protein.
          Length = 1537

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 486  RTIKVVNGAIKVLDICDIVMPEVMDAKQTSRFEIPNSCREMLGE--CIVNGSGEGCLCAQ 659
            R  K  +G+++ L +       V+ + +  + ++PN C ++  E  C++N SG  C+C +
Sbjct: 1463 RVQKFGHGSVEYLALNIDKTKGVLISHRYKQLDLPNPCLDLACEFLCLLNPSGATCVCPE 1522

Query: 660  MKF 668
             K+
Sbjct: 1523 GKY 1525


>AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein
            receptor related protein-deleted in tumor protein.
          Length = 4599

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 486  RTIKVVNGAIKVLDICDIVMPEVMDAKQTSRFEIPNSCREMLGE--CIVNGSGEGCLCAQ 659
            R  K  +G+++ L +       V+ + +  + ++PN C ++  E  C++N SG  C+C +
Sbjct: 4139 RVQKFGHGSVEYLALNIDKTKGVLISHRYKQLDLPNPCLDLACEFLCLLNPSGATCVCPE 4198

Query: 660  MKF 668
             K+
Sbjct: 4199 GKY 4201


>AC068195-1|AAX93243.1| 1126|Homo sapiens unknown protein.
          Length = 1126

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 486  RTIKVVNGAIKVLDICDIVMPEVMDAKQTSRFEIPNSCREMLGE--CIVNGSGEGCLCAQ 659
            R  K  +G+++ L +       V+ + +  + ++PN C ++  E  C++N SG  C+C +
Sbjct: 997  RVQKFGHGSVEYLALNIDKTKGVLISHRYKQLDLPNPCLDLACEFLCLLNPSGATCVCPE 1056

Query: 660  MKF 668
             K+
Sbjct: 1057 GKY 1059


>AB209707-1|BAD92944.1| 1720|Homo sapiens low density
            lipoprotein-related protein 1B variant protein.
          Length = 1720

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 486  RTIKVVNGAIKVLDICDIVMPEVMDAKQTSRFEIPNSCREMLGE--CIVNGSGEGCLCAQ 659
            R  K  +G+++ L +       V+ + +  + ++PN C ++  E  C++N SG  C+C +
Sbjct: 1260 RVQKFGHGSVEYLALNIDKTKGVLISHRYKQLDLPNPCLDLACEFLCLLNPSGATCVCPE 1319

Query: 660  MKF 668
             K+
Sbjct: 1320 GKY 1322


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,691,554
Number of Sequences: 237096
Number of extensions: 1601543
Number of successful extensions: 11688
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11688
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)