Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5o22
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 42 9e-05
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 38 0.001
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 36 0.004
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.010
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 33 0.053
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 31 0.16
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 31 0.16
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.65
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 29 0.86
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 28 1.1
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 27 2.0
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 27 2.6
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 3.5
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 26 4.6
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 26 4.6
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 26 6.0
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 6.0
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 25 8.0
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 41.9 bits (94), Expect = 9e-05
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Frame = +1
Query: 190 DEVQALEAILLKD---VVVKRVGDVPK---YIIETIIHPLTGDNIDQQYVCVTLEVGLSS 351
+E++AL+AI + D + V+ +V Y I +I + +C+ E+G S
Sbjct: 16 NEIEALKAIFMDDFEELKVRNAWNVTNGHVYCIHLCSRSANSKSIAKLDLCI--ELGRS- 72
Query: 352 GYPDTSPEVALKNPRGLDDMILDTINTHIQDKLKNNLGQPIVFELIGIVRDHLTXKQS 525
YP P + L+N + + + + + K K+ LG+ ++FEL IV+D+L QS
Sbjct: 73 -YPYVKPVIKLQNGENVLNSQIRFLLDKLDTKAKDLLGEEMIFELASIVQDYLNDWQS 129
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 536 QCVICLYDFVDGDLFIKTQCYHYFHNHCLANHFI 637
+CVICL F GD + C H FH C+A +
Sbjct: 320 ECVICLESFTKGDKVVALPCKHEFHRPCIAKWIV 353
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 36.3 bits (80), Expect = 0.004
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 533 GQCVICLYDFVDGDLFIKTQCYHYFHNHCL 622
G+C IC+ F D I+ C HYFH +C+
Sbjct: 394 GECTICMEMFKINDDVIQLPCKHYFHENCI 423
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 539 CVICLYDFVDGDLFIKTQ-CYHYFHNHCLANHFIAG 643
C+ICL + +GD+ K Q C H+FH C+ G
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFHQACIDQWLTTG 801
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 32.7 bits (71), Expect = 0.053
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 563 VDGDLFIKTQCYHYFHNHCL 622
+DG K C HYFHNHCL
Sbjct: 46 LDGLRIAKIPCGHYFHNHCL 65
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.16
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 539 CVICLYDFVDGDLFIKTQCYHYFHNHCL 622
C+IC D+ D+ C H FH C+
Sbjct: 205 CIICYADYAFDDILRVLPCEHVFHTQCI 232
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 31.1 bits (67), Expect = 0.16
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +1
Query: 346 SSGY--PDT--SPEVALKNPRGLDDMILDTINTHIQDKLKNNLGQPIVFELIGIVRDHLT 513
+SGY PD+ +PE ++ LDD+ + +Q N +PI F +I ++ ++T
Sbjct: 489 ASGYYTPDSLSTPEPSIDGLTNLDDV---QVGGFVQGSGNQNR-RPISFPVISNMQPNIT 544
Query: 514 XKQSSSWPVCHMPI 555
+S+S P+C P+
Sbjct: 545 NVRSASAPLCSSPV 558
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 29.1 bits (62), Expect = 0.65
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 536 QCVICLYDFVDGDLFIKT-QCYHYFHNHCL 622
+C++CL +F D + QC H+FH C+
Sbjct: 524 RCLVCLSNFELNDECRRLKQCNHFFHRECI 553
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 28.7 bits (61), Expect = 0.86
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 536 QCVICLYDFVD-GDLFIKTQCYHYFHNHCL 622
+C ICL ++ + L+ + C+H FH C+
Sbjct: 497 ECTICLCEYSEESPLYRELPCHHIFHPACI 526
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 512 LRSNLPRGQCVICLYDFVDGDLFIKTQCYHYFHNHCLANHF 634
L + + QC +C +F D F T+C H CL +++
Sbjct: 165 LEFQIRKFQCNVCFDEFNGTDCFQLTRCGHVSCQSCLRDYY 205
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 614 HCLANHFIAGKKYYHEELEKLPTWQQMQ 697
H N +A K Y++ELE TW+++Q
Sbjct: 42 HFQTNEKVALKMVYNDELEDKDTWKRLQ 69
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 586 DAMLSLLPQSLPCKPFHRWQE 648
D L L ++P KP H+W+E
Sbjct: 81 DGSLRLFDLTMPSKPIHKWKE 101
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 570 PSTKSYRHMTHWPRGRLLRSQMITYN 493
P T S RHM P +L+ +TYN
Sbjct: 708 PDTASLRHMIMGPSSKLISQFRLTYN 733
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 536 QCVICLYDFVDGDLFIKTQ-CYHYFHNHCLANHFIAG 643
+C+IC +F GD + + C FH C + G
Sbjct: 229 ECIICFEEFAAGDRVARIEYCLCIFHLKCYRDWLSTG 265
>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 265
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 322 CVTLEVGLSS--GYPDTSPEVALKNPRG 399
C + G +S G DTSP ALKNP G
Sbjct: 192 CSLYDRGYTSLGGVSDTSPNPALKNPDG 219
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = -3
Query: 582 INKSPSTKSYRHMTHWPRGRLLRSQMITYNSNKFKHYWLS 463
+ ++ +T+ + +GR +R+ M+ KFK Y L+
Sbjct: 142 VGRNANTEERNEFERFDKGRKIRATMVDVLREKFKDYGLT 181
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 522 LLRSQMITYNSNKFKHYW 469
+L SQ++ YN +K K+YW
Sbjct: 5 VLTSQVLVYNYSKRKNYW 22
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 8.0
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 265 IIETIIHPLTGDNIDQQYVCVTLEVGLSSGYPDTSPEVALKNPRGLDDMI--LDTINTHI 438
I E I L +D+Q L + +S P + LKNP GL+D + ++ + ++
Sbjct: 559 ISEEQIEELLNSGLDEQEGEKLLVLHVSEKDPVGTFTEVLKNPFGLEDALTEMEKVIKNL 618
Query: 439 QDKLKNNL 462
DK K +L
Sbjct: 619 IDKSKYDL 626
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,997
Number of Sequences: 5004
Number of extensions: 59287
Number of successful extensions: 171
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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