Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5o16
         (103 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               20   2.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   2.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    18   9.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             18   9.9  

>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 33 LFLSVISITLFF 68
          LFLSVI IT +F
Sbjct: 10 LFLSVILITSYF 21


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = -1

Query: 100 FFWFTYVALLQKNNVIDI 47
           F+WF Y++  ++ N  ++
Sbjct: 441 FYWFAYLSRSERINYYNV 458


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 76  LLQKNNVIDITLKNS 32
           +L  N   DITLKN+
Sbjct: 81  ILAVNAEADITLKNA 95


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 76  LLQKNNVIDITLKNS 32
           +L  N   DITLKN+
Sbjct: 81  ILAVNAEADITLKNA 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,897
Number of Sequences: 438
Number of extensions: 199
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 14
effective length of database: 140,211
effective search space used:  2664009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)