Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5o05
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 27 2.8
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass... 27 3.6
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 26 4.8
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 26 4.8
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 4.8
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 6.4
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 6.4
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 25 8.4
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 8.4
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 248 TFFPDSDSSPVEGNTEVNSRFC*STGHIL 334
++FP S S P E NTE SR ST L
Sbjct: 362 SYFPSSSSIPDECNTEEESRINPSTSKFL 390
>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
assembly of the V-ATPase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 500 GTDTARCHCYSSLAVDKK*LAQKAFSYCCQLVS 598
GT TA +C SSL+++KK +A AFS LV+
Sbjct: 98 GTVTAVWYCTSSLSIEKK-IALCAFSAILVLVA 129
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 255 FRTLIVVPLKEILKSTVDF-ADLLGIYFALNSVPGKGH-AKILTSAI 389
F+ L + I+ T+ F AD+L F +N +PG GH K + SAI
Sbjct: 227 FQKLFLGGFTGIIGQTLTFPADVLRRRFQVNRIPGIGHNYKNIKSAI 273
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 222 NFAKCYC*QHFFRTLIVVPLKEILKSTVDFADLLGIYFALN 344
N+ C C F T ++V ++++ + T+D GI+F ++
Sbjct: 291 NYYLCECDAFFLFTQMMVQVRDLYEKTLDHDSDHGIHFLMS 331
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 700 TAEAWIARTATNAHAHKWNILPIASSISAL*GVRANKLTTIGECFLGKSLL 548
T +A + T++ A W++ P+ SSI L A+K T+ E G SLL
Sbjct: 509 TPDAKQLSSLTSSDAEFWSVTPLKSSI--LRNGDASKQVTLSESPKGDSLL 557
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +3
Query: 144 LTNILGSRNMLRFLSACMLEDYIFSLNFAKCYC*QHFFRTLIVVPLKEILKSTVDF 311
L++ + S + L+F+ L FS C+C +F R + + L + + DF
Sbjct: 128 LSSAMASLHYLKFVKIIALSYICFSSLIRICHCWTYFIRIMGLSSLNKFVNLLHDF 183
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.8 bits (54), Expect = 6.4
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Frame = -1
Query: 601 RANKLTTIGECFLGKSLLVHSQTRVAVAACCISATLDSAQERT*RQ------SNSEPLAP 440
+ NKL TI + LG S L H Q + I+ + R Q SN+ PL P
Sbjct: 413 KLNKLPTIDKQILGTSSLTHFQDKTTAIEHSINKSNSKQPPRFKFQLPPRPTSNTLPLEP 472
Query: 439 TQSNTVRVTTNS 404
+ R + +S
Sbjct: 473 EEELVTRYSVSS 484
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -1
Query: 379 VRILAWPLPGTEFNAKYMPSRSAKSTV---DFSISFNGTTIRVRKK 251
V+IL WP P E N K PS + + + +S NG +++++
Sbjct: 5 VQILVWPFPCDEMNQK-TPSTVEEIRIALQELGLSTNGNKEKLKRR 49
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 58 VSRHLNKVQNDPISLRELLSLNICTLSYGLQIFWDLGICFV 180
+ R LN + + I+ R++ NI YG+ D G C V
Sbjct: 568 ILRGLNYIHSQGIAHRDIKPENILISEYGVLRITDFGACDV 608
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,058
Number of Sequences: 5004
Number of extensions: 64849
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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