Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5o05
         (733 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001118-1|AAH01118.1|  224|Homo sapiens transmembrane protein 1...   133   7e-31
Y18007-1|CAA77013.1|  224|Homo sapiens seven transmembrane domai...   120   5e-27
DQ644568-1|ABG29111.1|  203|Homo sapiens sigma-1 splice variant ...    33   1.4  

>BC001118-1|AAH01118.1|  224|Homo sapiens transmembrane protein 147
           protein.
          Length = 224

 Score =  133 bits (321), Expect = 7e-31
 Identities = 59/147 (40%), Positives = 94/147 (63%)
 Frame = +3

Query: 285 EILKSTVDFADLLGIYFALNSVPGKGHAKILTSAIGWASAELVVTRTVLLWVGARGSEFD 464
           E +K++VD ADL+G+   ++   GKG  KI+ +A+GWA+AEL+++R + LWVGARG EFD
Sbjct: 70  EFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGWATAELIMSRCIPLWVGARGIEFD 129

Query: 465 WRYVRSCAESNVALIQHAATATLVWLWTRSDLPKKHSPIVVSLLALTPYRALIEEAIGSI 644
           W+Y++   +SN++L+ +   +  VW+ TR DL     P V+ L+ L+ Y+A + E    +
Sbjct: 130 WKYIQMSIDSNISLVHYIVASAQVWMITRYDLYHTFRPAVLLLMFLSVYKAFVMETFVHL 189

Query: 645 FHLCAWALVAVRAIHASAVGLSALATY 725
             L +WA +  RA+    + LS LA Y
Sbjct: 190 CSLGSWAALLARAVVTGLLALSTLALY 216



 Score = 92.7 bits (220), Expect = 1e-18
 Identities = 40/58 (68%), Positives = 45/58 (77%)
 Frame = +2

Query: 86  MTLYHFGNCLALIYAPYHMAYKYSGISEYASFSKCVYAGGLYIFTQLCKMLLLATFFP 259
           MTL+HFGNC AL Y PY + YK SG+SEY +F KCV AG  Y+F QLCKML LATFFP
Sbjct: 1   MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFP 58


>Y18007-1|CAA77013.1|  224|Homo sapiens seven transmembrane domain
           protein protein.
          Length = 224

 Score =  120 bits (289), Expect = 5e-27
 Identities = 55/147 (37%), Positives = 90/147 (61%)
 Frame = +3

Query: 285 EILKSTVDFADLLGIYFALNSVPGKGHAKILTSAIGWASAELVVTRTVLLWVGARGSEFD 464
           E +K++VD ADL+G+   ++   GKG  KI+ +A+GWA+AEL+++R + LWVGARG EFD
Sbjct: 70  EFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGWATAELIMSRCIPLWVGARGIEFD 129

Query: 465 WRYVRSCAESNVALIQHAATATLVWLWTRSDLPKKHSPIVVSLLALTPYRALIEEAIGSI 644
           W+Y++   +SN++L  +   +  VW+ TR DL     P V+ L+ L  Y+A + E    +
Sbjct: 130 WKYIQMSIDSNISLGPYIVASAQVWMITRYDLYHTFRPAVLLLMFLRVYKAFVMETFVHL 189

Query: 645 FHLCAWALVAVRAIHASAVGLSALATY 725
             L +WA++    +    + +  LA Y
Sbjct: 190 CSLGSWAVLMAGVVVKGLLVIRNLAMY 216



 Score = 88.6 bits (210), Expect = 2e-17
 Identities = 38/58 (65%), Positives = 44/58 (75%)
 Frame = +2

Query: 86  MTLYHFGNCLALIYAPYHMAYKYSGISEYASFSKCVYAGGLYIFTQLCKMLLLATFFP 259
           MTL+HFGNC AL Y PY + YK + +SEY +F KCV AG  Y+F QLCKML LATFFP
Sbjct: 1   MTLFHFGNCFALAYFPYFITYKCTDLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFP 58


>DQ644568-1|ABG29111.1|  203|Homo sapiens sigma-1 splice variant
           protein.
          Length = 203

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = +3

Query: 465 WRYVRSCAESNVALIQHAATATLVWLWTRSDLPKKHSPIVVSLLALTPYRALIEEAIGSI 644
           W   R  A + + L   A    +VWLW   D     S ++V L  L P   L +E +  +
Sbjct: 3   WAVGRRWAWAALLLAVAAVLTQVVWLWLGLDHELAFSRLIVELRRLHPGHVLPDEELQWV 62

Query: 645 FHLCAWALVAVRAIHAS 695
           F      + A+  +HAS
Sbjct: 63  FVNAGGWMGAMCLLHAS 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,399,870
Number of Sequences: 237096
Number of extensions: 2458634
Number of successful extensions: 8591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8591
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)