Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5n24
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    28   1.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   5.9  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   7.9  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   7.9  

>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 36  LIFFNKLHKHKRIYLIINYAISIYRLKSCYNSKNFVQELLFKSTFQ 173
           L  +   H  KRIYLI+ +A      +    +K F +E+  K  FQ
Sbjct: 150 LRLYGHFHDEKRIYLILEFAGRGELYQHLRRAKRFSEEVASKYIFQ 195


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 510 VFYFEQWYIPSRSHKVIILFHCSIF*YVLLTISLCNLVRTKIEV-FIF 370
           V+YF  W++    ++  ILF  S F   LL I L     +K+ V F+F
Sbjct: 303 VWYFPLWHMGISGYEACILFELSPF---LLGIPLLRKFASKVPVIFLF 347


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 600 Y*SFERIFFRFKTLRISVFIFVG 532
           Y  F+R+FF    LR +V I VG
Sbjct: 323 YTKFQRVFFLTNVLRSAVIIIVG 345


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 271 YHTLLVKVFQAAL*YSDQCIFYFYLHFV 188
           + T LV+VFQ    +    +FY + HF+
Sbjct: 110 FDTFLVRVFQFCAFFFGGIVFYIFNHFL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,792
Number of Sequences: 5004
Number of extensions: 54573
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)