Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5n24
         (693 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2411|AAO41185.1|  148|Drosophila melanogaster CG33649-P...   111   1e-24
AF017777-11|AAC28411.1|  574|Drosophila melanogaster misato prot...    29   7.9  
AE014298-3139|AAF50817.1|  574|Drosophila melanogaster CG1424-PA...    29   7.9  

>AE014134-2411|AAO41185.1|  148|Drosophila melanogaster CG33649-PA,
           isoform A protein.
          Length = 148

 Score =  111 bits (266), Expect = 1e-24
 Identities = 53/114 (46%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
 Frame = +1

Query: 157 SKVPSNPV-STVQNEDKNKICIDPSTITLLERLSLVKYDTPKGIKVLEDSITFANKILHI 333
           +KVP  PV S   +   ++I ID  TI LLERLSLV  D+ + +  L+ SI FA+KI HI
Sbjct: 33  TKVPQTPVDSKFPDTSASEIQIDTKTIQLLERLSLVDLDSERALATLKSSIQFADKIAHI 92

Query: 334 NTDNIEPLYXXXXXXXXXXRPDKITQGNCQKDILKNATVKEDDYFVAPTGNIPL 495
           NT+++ PLY          R D++T+G+C+ ++L+NA V ++DYFV+P GNIPL
Sbjct: 93  NTEHVRPLYTVLEHQQLQLRNDQVTEGDCRAEVLRNAKVTDEDYFVSPPGNIPL 146


>AF017777-11|AAC28411.1|  574|Drosophila melanogaster misato
           protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 421 QKDILKNATVKEDDYFVAPTGN 486
           Q+D+LKNA V E +Y +A T N
Sbjct: 138 QRDLLKNAVVPEKNYQLAATAN 159


>AE014298-3139|AAF50817.1|  574|Drosophila melanogaster CG1424-PA
           protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 421 QKDILKNATVKEDDYFVAPTGN 486
           Q+D+LKNA V E +Y +A T N
Sbjct: 138 QRDLLKNAVVPEKNYQLAATAN 159


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,299,250
Number of Sequences: 53049
Number of extensions: 491619
Number of successful extensions: 903
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)