Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5n19
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 58 1e-09
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 48 1e-06
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 41 1e-04
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 34 0.016
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.46
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 26 4.3
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 5.7
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 25 5.7
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 7.5
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 7.5
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 10.0
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil... 25 10.0
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 25 10.0
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 10.0
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 57.6 bits (133), Expect = 1e-09
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +1
Query: 313 FGTSSPFDQDVERATSENNT--SEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPH 486
+ ++S F D+E+ATSE SEE L +EI D+ + S K +R + R+ H +P+
Sbjct: 5 WNSNSQFASDIEKATSETLPAGSEEISLYLEISDQIRSKSVDPKFAMRILKSRIDHSNPN 64
Query: 487 VQVHAATLLDACVAXCGRFFHLEV 558
VQ+ A L D CV G F LE+
Sbjct: 65 VQIMALKLTDTCVKNGGSGFLLEI 88
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 47.6 bits (108), Expect = 1e-06
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 316 GTSSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTS-AKECLRAVMRRLAHPDPHVQ 492
G + + + +AT E NT E+W +IM+ CD+ ++S + ++ + +RL + ++Q
Sbjct: 4 GKPNSIETLILQATDEKNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQ 63
Query: 493 VHAATLLDACVAXC 534
+ A TL DA V C
Sbjct: 64 LLALTLTDAIVKNC 77
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 319 TSSPFDQDVERATSENNTSEEWGLIMEICDRAGASS-TSAKECLRAVMRRLAHPDPHVQV 495
+S + +++AT + N L +EI D + +E +++R+ +P V
Sbjct: 3 SSQTLSKYIDKATDQFNLEPNLALNIEIADLINEKKGNTPREAALLILKRVNSANPTVSY 62
Query: 496 HAATLLDACVAXCGRFFHLEV 558
A LLD CV CG FH ++
Sbjct: 63 LALHLLDICVKNCGYPFHFQI 83
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 33.9 bits (74), Expect = 0.016
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 343 VERATSENNTSEEWGLIMEICDRAGASSTSA-KECLRAVMRRLAHPDPHVQVHAATLLDA 519
++ AT + + ++I D + + +E A++R++ +P V A LLD
Sbjct: 12 IQNATEPYAFEPDLAVNLDIADLINQTGGNLPREAAFAIVRKVNDRNPTVAYLALNLLDI 71
Query: 520 CVAXCGRFFHLEV 558
CV CG F L++
Sbjct: 72 CVKNCGYAFRLQI 84
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 29.1 bits (62), Expect = 0.46
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 368 LFSLVARSTS*SKGEEVPNIPILLTKKLQNIYLIICY 258
+FS++ S+ + ++ I LT L N++L ICY
Sbjct: 1 MFSILGNSSKKKRNTQIYRIFFTLTFSLSNLFLAICY 37
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 4.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 452 ARRHSFALVEDAPARSHISMISPHSSLVLFSLV 354
AR+HSFA E+ A IS+ + HS V F V
Sbjct: 502 ARKHSFAEDEEREAPEDISLHNTHSD-VTFDFV 533
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 313 FGTSSPFDQDVERATSENNTSEEWGLIMEI 402
FG++ P D++ + T+ +NTS + L +I
Sbjct: 331 FGSTEPIDEEEKSKTASDNTSLQTSLFGKI 360
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 208 ILQTKISCFMKNLRNKNTDYIISVDTKVF 122
+L+++ C +KNL+N +TD +I + F
Sbjct: 608 LLRSEADCIIKNLQNFSTDDLIIKSNEKF 636
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 7.5
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = -2
Query: 456 DGTETLLRTGRRCTGAITYLHDQSPLLAGVIFTRCAFNILIKRRGSAKYSHFVNKKTSKH 277
D L R +R T + + Q+P L I L+ RGS + N K +H
Sbjct: 330 DEDRYLYRAAKRVTSKLEKVSKQNPTLVYPIAIH-----LLGERGSLNFDRVTNTKLVEH 384
Query: 276 LL 271
+L
Sbjct: 385 IL 386
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 295 VNKMGIFGTSSPFDQDVERATSENNTSEEWGLIMEICD 408
+N++ ++ D D++ SEN SE+WGL ++C+
Sbjct: 1082 INQLSLYIFEMFMDDDLK--LSEN--SEDWGLFSKLCN 1115
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 438 GVSPCRHAALGASRP 482
GVS C++AA GAS P
Sbjct: 234 GVSHCKYAAAGASYP 248
>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 195
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 134 YEGLYYLPYIYSTYLNIKAYFFN 66
YEG YY+ + ST IK Y+++
Sbjct: 148 YEGFYYISFSQSTG-KIKGYYYH 169
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 429 QCEGVSPCRHAALGASRPTRTGSRRHTARRLRCXL 533
QC VS R+ A + R R + ++LRC +
Sbjct: 351 QCHAVSTLRNLAASSERNKRAIIEANAIQKLRCLI 385
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +1
Query: 346 ERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH 474
ER + + E L+ C+R A EC+ +M L H
Sbjct: 777 ERRVASSTIDEFQKLLCLCCNRVDCVRQLALECMNYIMETLPH 819
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,088
Number of Sequences: 5004
Number of extensions: 46716
Number of successful extensions: 127
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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