Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5n19
(559 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte grow... 56 2e-08
U97407-8|AAN84851.1| 397|Caenorhabditis elegans Prion-like-(q/n... 48 3e-06
U97407-7|AAB52480.2| 457|Caenorhabditis elegans Prion-like-(q/n... 48 3e-06
U41542-4|AAK39154.1| 437|Caenorhabditis elegans Hypothetical pr... 48 6e-06
U41542-3|AAK39156.1| 403|Caenorhabditis elegans Hypothetical pr... 48 6e-06
AF003385-3|AAB54248.2| 228|Caenorhabditis elegans Hypothetical ... 28 4.0
Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z68014-8|CAI79183.1| 121|Caenorhabditis elegans Hypothetical pr... 27 9.1
U28409-2|AAN60501.1| 288|Caenorhabditis elegans Hypothetical pr... 27 9.1
>U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte growth
factor-regulatedtk substrate (hrs) family protein 1
protein.
Length = 729
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/79 (32%), Positives = 40/79 (50%)
Frame = +1
Query: 322 SSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHA 501
++ F + +++AT W I+ D + AK L+A+ +R+ H +PHV H
Sbjct: 2 ATKFQRVLDQATDSTLVEPNWEGIILCTDMIRSGEVPAKPSLQAIRKRMQHENPHVVNHT 61
Query: 502 ATLLDACVAXCGRFFHLEV 558
+LDACV CG H EV
Sbjct: 62 LLVLDACVKNCGHKVHAEV 80
>U97407-8|AAN84851.1| 397|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
isoform b protein.
Length = 397
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/78 (30%), Positives = 41/78 (52%)
Frame = +1
Query: 325 SPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAA 504
S ++ + + T+ T E W I+ CD +K ++++ +RL + DPHV + A
Sbjct: 2 SAYEDLLGKITAPTITVENWEGILAFCDMINNDFEGSKTGIKSLRKRLNNRDPHVVLLAI 61
Query: 505 TLLDACVAXCGRFFHLEV 558
++LD+C A C F EV
Sbjct: 62 SVLDSCWANCEERFRKEV 79
>U97407-7|AAB52480.2| 457|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
isoform a protein.
Length = 457
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/78 (30%), Positives = 41/78 (52%)
Frame = +1
Query: 325 SPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAA 504
S ++ + + T+ T E W I+ CD +K ++++ +RL + DPHV + A
Sbjct: 10 SAYEDLLGKITAPTITVENWEGILAFCDMINNDFEGSKTGIKSLRKRLNNRDPHVVLLAI 69
Query: 505 TLLDACVAXCGRFFHLEV 558
++LD+C A C F EV
Sbjct: 70 SVLDSCWANCEERFRKEV 87
>U41542-4|AAK39154.1| 437|Caenorhabditis elegans Hypothetical
protein C07A12.7a protein.
Length = 437
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Frame = +1
Query: 322 SSPFDQDVERATSENN-TSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH---PDPHV 489
++P + +E AT N +E WGL MEICD + ++ +RA+ +RL + + V
Sbjct: 36 ATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKNNAV 95
Query: 490 QVHAATLLDACVAXCGRFFHLEV 558
++ T+L+ V C FH+ V
Sbjct: 96 VMYTLTVLETAVKNCNHHFHVLV 118
>U41542-3|AAK39156.1| 403|Caenorhabditis elegans Hypothetical
protein C07A12.7b protein.
Length = 403
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Frame = +1
Query: 322 SSPFDQDVERATSENN-TSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH---PDPHV 489
++P + +E AT N +E WGL MEICD + ++ +RA+ +RL + + V
Sbjct: 36 ATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKNNAV 95
Query: 490 QVHAATLLDACVAXCGRFFHLEV 558
++ T+L+ V C FH+ V
Sbjct: 96 VMYTLTVLETAVKNCNHHFHVLV 118
>AF003385-3|AAB54248.2| 228|Caenorhabditis elegans Hypothetical
protein R08F11.6 protein.
Length = 228
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 162 LFLKFFIKQEIFV*SILFHSDFSIKNYLIFLSITYNQ 272
L KF + Q + V I +S S+ + LIFLS+TYNQ
Sbjct: 90 LLTKFGMHQTLIVFGI--YSMLSLFSKLIFLSLTYNQ 124
>Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical
protein K12D12.2 protein.
Length = 1696
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 370 TSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAATLLDACVAXC 534
T+ E L +I + + A ST L ++ R P+ HV VH+ L+ C A C
Sbjct: 455 TARERELQEQIEENSMAFSTERSIELCRLLERARLPNHHV-VHSVAYLEMCAAVC 508
>Z68014-8|CAI79183.1| 121|Caenorhabditis elegans Hypothetical
protein W04G3.11 protein.
Length = 121
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 60 HNIKKIRLNIEIRTVNIR*IIKTF 131
HNIK I + +E+ T NI I+TF
Sbjct: 72 HNIKNITVYLELLTENINTTIRTF 95
>U28409-2|AAN60501.1| 288|Caenorhabditis elegans Hypothetical
protein T25D10.5 protein.
Length = 288
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 181 MKNLRNKNTDYIISVDTKVFIIYRI 107
MKNL+N + +S +TKV +YR+
Sbjct: 260 MKNLKNSAVFWNLSDETKVLFLYRL 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,550
Number of Sequences: 27780
Number of extensions: 261247
Number of successful extensions: 662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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