Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5n15
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0154 + 12831120-12831222,12831761-12831858,12832019-128321...    31   0.91 
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798     30   1.6  
12_02_1099 - 26072301-26072468,26072642-26072751,26072966-260730...    29   4.8  
11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788     29   4.8  
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341...    29   4.8  
01_02_0048 - 10626467-10627498,10628522-10628617                       28   6.4  
04_04_1022 + 30195703-30195753,30195925-30195987,30197535-301978...    28   8.5  

>09_03_0154 +
           12831120-12831222,12831761-12831858,12832019-12832195,
           12832307-12832407,12832503-12832578,12832665-12832724,
           12832810-12832994,12833078-12833174,12833279-12833365,
           12833453-12833511,12833617-12833708,12833821-12833898,
           12834000-12834160,12834267-12834485
          Length = 530

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 603 WGLPVDLASSDFGVVASSFLASVEELVSLFLAASVWCSGTIL 478
           WG P   A   F ++ +SF+A V E    F+AAS + S T++
Sbjct: 276 WGAPTFDAGEAFAMMMTSFIALV-ETTGAFIAASRYASATMI 316


>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
          Length = 268

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 357 DADTGVASVTFSASGFTFLSSVLVSTAEVVF 265
           DAD GVA+V  +  G  F S V ++ AE VF
Sbjct: 53  DADDGVAAVVLAGRGRAFCSGVDLTAAEEVF 83


>12_02_1099 -
           26072301-26072468,26072642-26072751,26072966-26073014,
           26073081-26073495,26073604-26074019
          Length = 385

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -3

Query: 713 YLNPHESYSQETKGQYDSTNKAWSIKCSCLYSWFYVCG 600
           YL  H    ++  G  D+ +  WS    C Y W    G
Sbjct: 250 YLQTHTGLGRKPDGTVDADSDFWSSHIECSYVWIIPAG 287


>11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788
          Length = 1130

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 571 IRTCQIYWKPPHT*NQLYRQEHLMDQALLVES 666
           IR CQ+   P HT  +L R  H++  A LV S
Sbjct: 617 IRGCQLRSLPDHTSQKLLRVRHIIGPASLVSS 648


>01_06_0646 -
           30832201-30832838,30833643-30833838,30833975-30834126,
           30834258-30834303,30834992-30835216,30835374-30835414,
           30835705-30835834,30835951-30836019,30836254-30836307,
           30836389-30836547,30836854-30836991,30837079-30837141,
           30837225-30837264,30837369-30837415,30838062-30838373
          Length = 769

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 131 LAMCIALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAV 250
           +A  I LP E+  A LG  V   HD P APG   +    V
Sbjct: 1   MASHIILPKEEEAA-LGVAVEEDHDSPAAPGYQHQQGPPV 39


>01_02_0048 - 10626467-10627498,10628522-10628617
          Length = 375

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 131 LAMCIALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAVQPTKQN 268
           LA+ + + AE   A  G   P P  + QAP  PE+ A     T  N
Sbjct: 228 LAVALGVDAEVPSANHGADEPEPLPMLQAPPPPEDMAPESSSTATN 273


>04_04_1022 +
           30195703-30195753,30195925-30195987,30197535-30197843,
           30197934-30199292
          Length = 593

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 671 QYDSTNKAWSIKCSCLYSWFYVCGGFQ*IWQVLISEW 561
           Q+D  N A   +    +SWFY+C  F  I   L   W
Sbjct: 201 QFDDDNTADRERKMSFFSWFYICVDFGMIVSGLFIVW 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,099,582
Number of Sequences: 37544
Number of extensions: 289720
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)