Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5n11
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +1

Query: 262 YGEERHYLLQRTCYTSFADSICLRDSSD---CDELDVQVLPGNLEVIVPTLRKLEGISNW 432
           +G +   LL+R+  T+F D + LR          + V ++   +E+  PT++ LEG+   
Sbjct: 283 FGTQFEILLKRSLRTTFRDPLLLRVRFAQILATAILVGIVNWRVELKGPTIQNLEGVMYN 342

Query: 433 CSRNGT 450
           C+R+ T
Sbjct: 343 CARDMT 348


>Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical
           protein R10D12.2 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 375 WKYLHIQLITIRRVTKANAISKTCITCTL*QIVSF 271
           W  L +   T+    + N +++TC+ CT+ + V F
Sbjct: 30  WINLILVSFTLNNYDQTNEVARTCLVCTITENVRF 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,305,824
Number of Sequences: 27780
Number of extensions: 250611
Number of successful extensions: 594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)