Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5n09
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...    28   1.1  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    27   1.9  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   2.5  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.5  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   2.5  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   2.5  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.5  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.3  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    27   3.3  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    26   4.4  
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ...    26   5.8  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   7.7  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   7.7  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   7.7  

>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 590 KGENRKKVLKETEELQKEFSEKG 658
           K E ++KVLK  + LQKEF E+G
Sbjct: 153 KIEMQEKVLKNFQRLQKEFREEG 175


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +2

Query: 146 VLSASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYGDKHDAFVALAKDSKDVDE 325
           V  AS+ +  + + EL+  S N +++  +      ++  P G  HD  + LA+   D++E
Sbjct: 168 VFQASMGDAISTNDELESWSNNLLLSMLDQK----NITVPIGASHDDLIVLARRYYDIEE 223


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -2

Query: 570 ASLSKFLTQPGKLRYKPVFSRTNRRSSSVVKPWESSNGIGSFLPLRKSLTTGKLS 406
           +SL   L  P K  ++PV  R    SS +VKP  SS+   S   L  SL + +L+
Sbjct: 429 SSLLTPLALPNKKAFQPVKFRVPSFSSPLVKPASSSSFGRSHSHLGTSLRSNELN 483


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = -1

Query: 526 QAGVFANKSSKFISGETLGVIKWYWIIFTFEEESHYRKIIFGSSVLLCQYLVIFFTVILH 347
           + G++   S   + G  L +  W W         H+ KIIF +  ++C Y+ +F      
Sbjct: 92  EIGIWNYISVAEMGGVLLFLSYWIWTCL------HFSKIIFPAQKVICLYIFLF-----A 140

Query: 346 ADFSYQKFIHVFRVLRECNKSIVFISIWKCNVEFY*RSF--KFVYY 215
            + + Q+ I  +    EC K   F S+++  ++F   +F   FV Y
Sbjct: 141 LNQTLQECIEEYVFSSECIKYRQFYSVYEI-IDFLRTNFYRLFVIY 185


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = -1

Query: 526 QAGVFANKSSKFISGETLGVIKWYWIIFTFEEESHYRKIIFGSSVLLCQYLVIFFTVILH 347
           + G++   S   + G  L +  W W         H+ KIIF +  ++C Y+ +F      
Sbjct: 92  EIGIWNYISVAEMGGVLLFLSYWIWTCL------HFSKIIFPAQKVICLYIFLF-----A 140

Query: 346 ADFSYQKFIHVFRVLRECNKSIVFISIWKCNVEFY*RSF--KFVYY 215
            + + Q+ I  +    EC K   F S+++  ++F   +F   FV Y
Sbjct: 141 LNQTLQECIEEYVFSSECIKYRQFYSVYEI-IDFLRTNFYRLFVIY 185


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = -1

Query: 526 QAGVFANKSSKFISGETLGVIKWYWIIFTFEEESHYRKIIFGSSVLLCQYLVIFFTVILH 347
           + G++   S   + G  L +  W W         H+ KIIF +  ++C Y+ +F      
Sbjct: 64  EIGIWNYISVAEMGGVLLFLSYWIWTCL------HFSKIIFPAQKVICLYIFLF-----A 112

Query: 346 ADFSYQKFIHVFRVLRECNKSIVFISIWKCNVEFY*RSF--KFVYY 215
            + + Q+ I  +    EC K   F S+++  ++F   +F   FV Y
Sbjct: 113 LNQTLQECIEEYVFSSECIKYRQFYSVYEI-IDFLRTNFYRLFVIY 157


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = -1

Query: 526 QAGVFANKSSKFISGETLGVIKWYWIIFTFEEESHYRKIIFGSSVLLCQYLVIFFTVILH 347
           + G++   S   + G  L +  W W         H+ KIIF +  ++C Y+ +F      
Sbjct: 92  EIGIWNYISVAEMGGVLLFLSYWIWTCL------HFSKIIFPAQKVICLYIFLF-----A 140

Query: 346 ADFSYQKFIHVFRVLRECNKSIVFISIWKCNVEFY*RSF--KFVYY 215
            + + Q+ I  +    EC K   F S+++  ++F   +F   FV Y
Sbjct: 141 LNQTLQECIEEYVFSSECIKYRQFYSVYEI-IDFLRTNFYRLFVIY 185


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 122 VLPVVFLAVLSASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYGDKH 280
           +L  V L  LS SL  +      +D+ISFN  +++ +AS       +  GDKH
Sbjct: 59  ILKDVSLKRLSKSLDRSLPSENTIDQISFNHAMSEEDAS------GYQIGDKH 105


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 356 YGEKDNEVLAKKYGATK 406
           YGE DN  L +KYG TK
Sbjct: 294 YGELDNSELFRKYGFTK 310


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 170 YSQEKLIVQPKIQPGERNYEALFSMNTII 84
           Y Q  +  +P + P   NY   FS+ T+I
Sbjct: 386 YKQSLINQKPSLNPSITNYRRFFSVGTVI 414


>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
           Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 374 EVLAKKYGATKDNFPVVRLFLKGKNDPIPFDDSQGFTTD--ELRRFVRENTGLYL 532
           E+L K + A K N+PVV L +  + D   F     + T   + R F     GL++
Sbjct: 48  EILEKMHAAPKPNYPVVTLDVLTQYDAFLFGYPTRYGTPPAQFRTFWDSTGGLWV 102


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/56 (19%), Positives = 27/56 (48%)
 Frame = +2

Query: 287 FVALAKDSKDVDELLIAEVGVKDYGEKDNEVLAKKYGATKDNFPVVRLFLKGKNDP 454
           F ++ ++ +D  ++ + EV    Y E+D+   A  +   ++NF + +       +P
Sbjct: 3   FKSIQQNIEDEGKVNVREVNPDSYAERDHGYTAGIFSDAEENFGITQQVADSTQNP 58


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 288 KASCLSPYGNATSNFTREASNL-FITLLNEISSNSTEPVD 172
           K +  +PY NA  NFT   S L +I L++    N ++ ++
Sbjct: 484 KTTLNTPYANAVGNFTGLFSGLIYIVLISYFFPNKSDDLN 523


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 251 DVAFPYGDKHDAFVALAKDSKDVDELLIAEVGVKDYGEKDNEVL 382
           D+A  Y     +   L KDSK +  L   ++ V++    +++V+
Sbjct: 173 DIAMLYNSSRPSLAVLYKDSKSIVHLSTYKINVREQEIDEDDVV 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,030
Number of Sequences: 5004
Number of extensions: 48857
Number of successful extensions: 188
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)