Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5n09
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0236 - 1725061-1727070                                           31   0.64 
06_03_0119 - 16849657-16849742,16850321-16850426                       31   1.1  
09_03_0001 - 11373469-11373862,11374072-11374264,11374414-113744...    30   1.5  
04_04_1065 + 30529555-30530076                                         30   1.5  
06_01_0272 + 2016836-2017963                                           29   4.5  

>07_01_0236 - 1725061-1727070
          Length = 669

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -2

Query: 285 ASCLSPYGNATSNFTREASNLFITLLNEISSNSTEPVDVFAREADSTAKN 136
           A  L+ + + T NF+R  SN F+ LLN+ ++ +T    +FA E D+   N
Sbjct: 106 AQGLTFFVSPTKNFSRAFSNQFLGLLNKKNNGNTSN-HIFAVELDTVLNN 154


>06_03_0119 - 16849657-16849742,16850321-16850426
          Length = 63

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -1

Query: 394 VLLCQYLVIFFTVILHADFSYQKFIHVFRVLRECNKSIVFISIWKCNV 251
           ++L Q +++F+TVIL   FS  +    F   R+ + +++ I +W+  +
Sbjct: 10  LVLMQIIMVFYTVILSCSFSDARTFPEFFTQRDKDLTMLSIVLWQATI 57


>09_03_0001 -
           11373469-11373862,11374072-11374264,11374414-11374482,
           11374858-11374984,11375223-11375485,11375697-11375785,
           11375832-11375909,11376070-11376141,11376234-11376372,
           11378857-11379323,11380781-11381345,11382553-11382622
          Length = 841

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = +2

Query: 449 DPIPFDDSQGFTTDELRRFVRE------NTGLYLSLPGCVRNLDKLAIKFMKAKGEN-RK 607
           DP+   +S+ FT +EL++F           G      GC+ N  ++A+K +    EN   
Sbjct: 517 DPLQITESRQFTYEELKKFTNNFQQFIGRGGFGNVYYGCLENKTEVAVKMLSEFSENGLD 576

Query: 608 KVLKETEELQK 640
           + L E + L K
Sbjct: 577 QFLAEVQSLTK 587


>04_04_1065 + 30529555-30530076
          Length = 173

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 524 LYLSLPGCVRNLDKLAIKFMKAKGENRKKVLKETEELQKEFSEKG 658
           L    P  V  LD    +  K   E  K +L+E E ++KE++EKG
Sbjct: 87  LLACFPVPVDQLDDYWARKNKIHDEGAKPILEEQERIRKEYNEKG 131


>06_01_0272 + 2016836-2017963
          Length = 375

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 272 DKHDAFVALAKDSKDVDELLIAEVGVKDYGEKDNEVLAKKY 394
           DK   +V   ++S  V+E L A  G      KD+ V+ KKY
Sbjct: 274 DKPGDYVVATEESHTVEEFLQAAFGYAGLNWKDHVVIDKKY 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,296,162
Number of Sequences: 37544
Number of extensions: 258857
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)