Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5n09
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 29 4.1
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 29 4.1
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 29 4.1
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 29 4.1
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 29 4.1
Z50874-10|CAA90770.1| 302|Caenorhabditis elegans Hypothetical p... 28 5.4
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 28 5.4
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 28 5.4
Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL110500-16|CAD92405.1| 356|Caenorhabditis elegans Hypothetical... 27 9.4
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 428 LFLKGKNDPIPFDDSQGFTTDELRRF 505
LF+ G N +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 428 LFLKGKNDPIPFDDSQGFTTDELRRF 505
LF+ G N +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 428 LFLKGKNDPIPFDDSQGFTTDELRRF 505
LF+ G N +PF+ ++ FTT + R F
Sbjct: 379 LFVSGNNGQVPFEFTEHFTTKQKRPF 404
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 428 LFLKGKNDPIPFDDSQGFTTDELRRF 505
LF+ G N +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 428 LFLKGKNDPIPFDDSQGFTTDELRRF 505
LF+ G N +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369
>Z50874-10|CAA90770.1| 302|Caenorhabditis elegans Hypothetical
protein R10E4.11 protein.
Length = 302
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -1
Query: 433 EESHYRKIIFGSSVLLCQYLVIFFTVILHADFSYQKFIHVFRVLR-----ECNK-SIVFI 272
E+SHYR +V+ C+Y V F + ++K H+ + LR +CN+ S+VF
Sbjct: 211 EKSHYRTSTSKHAVMECRYCVRQFRTVKEV-IEHEKEKHLAKPLRKTQFFKCNECSVVFT 269
Query: 271 S 269
S
Sbjct: 270 S 270
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 563 KLAIKFMKAKGENRKKVLKETEELQKEFSEKGS*VCKNL 679
+L + MKA+ E R ++ KE EE+++ S++ S + N+
Sbjct: 204 QLELTEMKARQEERDRLTKEKEEMRQRMSDEMSEMRNNI 242
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 572 IKFMKAKGENRKKVLKETEELQKEFSEKGS*VCK 673
IK+ + G +R+ VLKE EL +++ EK +C+
Sbjct: 1861 IKWEELLGPDREFVLKEVYELWEDYREKRPRICR 1894
>Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical
protein W02A11.8 protein.
Length = 266
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = +2
Query: 221 NKFEASLVKFDVAFPYGDKHDAFVALAKDSK---DVDELLIAEVG-----VKDYGEKDNE 376
NKFE+ + D +GD + A D K + D +I EVG ++D+GE+ +
Sbjct: 55 NKFESIAMSAD----FGDFDEMVYNYAIDGKCTIEADITIIKEVGDARAKLRDFGEETRD 110
Query: 377 VLAKKYGATKDNFPVVRLFLKGKN 448
V + F V ++FL ++
Sbjct: 111 VSDVVINVQNEKFHVSKMFLAAQS 134
>AL110500-16|CAD92405.1| 356|Caenorhabditis elegans Hypothetical
protein Y87G2A.16 protein.
Length = 356
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 277 FISIWKCNVEFY*RSFKFVYYFIERNF 197
F W+CN+ Y +F F+ Y NF
Sbjct: 253 FPQSWRCNLHQYFSNFTFILYSSSHNF 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,271,987
Number of Sequences: 27780
Number of extensions: 261671
Number of successful extensions: 938
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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