Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5n05
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 38 7e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 2.1
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 6.5
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 25 6.5
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 25 6.5
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 25 6.5
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.5
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 25 8.6
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 8.6
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 38.3 bits (85), Expect = 7e-04
Identities = 22/71 (30%), Positives = 38/71 (53%)
Frame = -3
Query: 477 VFQGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQINLASCCVVPPALHAFCRANDVQLLT 298
V +G++ LGV++ G L+ L + V P QIN+ C +P L F + ++L
Sbjct: 169 VGEGKIGTLGVSEFGVNELQRLISSVNVVPESTQINIGQNCKLPNDLLNFADRHHLKLFF 228
Query: 297 HADPPST*SQA 265
H+DP + S++
Sbjct: 229 HSDPSALLSES 239
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 290 SACVSSWTSLARQNACRAGGTTQHEARLICAMAGRTRDHACSTLRQPPPTSATPSCFT 463
S +S TS++ ++ A +T + + T + ST+ PPPT++ PS FT
Sbjct: 648 STTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTT--SSSTVSTPPPTTSFPSTFT 703
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 2.1
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = -2
Query: 274 IASLGCFQSTLDSFRPRRAARETPVLQ--SIVH-CRRCSITLPVPTTCSSYASLSTCAYW 104
+ S G Q+T+DSFRP ETPV S+VH R + V + S Y++ S+ + +
Sbjct: 140 LTSPGNKQNTVDSFRP---LPETPVSPGGSLVHPLPRPPLPSSVSSHSSPYSTTSSTSLY 196
Query: 103 AVF 95
+++
Sbjct: 197 SLY 199
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 335 TRSAAPTTSSCSHTPTR-RVRDRKLRLLSVYAGF 237
T P SSC+HT T R+R + L+S Y +
Sbjct: 64 TSDGRPVCSSCAHTCTACRMRIKDYALMSGYDSY 97
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 118 TCAYWAVFLVSILLSGSKLPIY*KFKYTFLFKCY*Y 11
TCAY+ +F +S LL S Y L K Y Y
Sbjct: 118 TCAYFVIFSISFLLGISGTGPSLNASYKSLCKLYSY 153
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 389 PPSRRSTWPRAAWSRRPCTRSAAPTTSSCSHTPTRRVRDR 270
PP+ RST + ++RP RS + SS + R DR
Sbjct: 170 PPNDRSTLSSSQKAKRPLKRSYSEKNSSNAEPSGSRSGDR 209
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 308 SCSHTPTRRVRDRKLRLLSVYA 243
S H P+ R RD K +LS+YA
Sbjct: 203 STVHAPSTRQRDLKSSILSLYA 224
>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 161
Score = 25.0 bits (52), Expect = 6.5
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 93 RKTA-Q*AHVDNDAYEEHVVGTGSVILHRRQCTMDW 197
RKTA A VDN + EE V G S QCT++W
Sbjct: 34 RKTALHLAGVDNLS-EEQVKGFISAYAPESQCTIEW 68
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 145 WSARAA*YYTVGSARWTGVLESHAQLY 225
W+A+ A S WTG+L S+ +Y
Sbjct: 641 WNAKIAPIINTFSNNWTGILWSNYAIY 667
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 24.6 bits (51), Expect = 8.6
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = -2
Query: 403 VPRPSRHRADQPGLVLRGPAGPARVLPRQRRPAAHTRRPAEYVIASLGCFQSTLD 239
+P P H D + P LPR+ P ++PAE ++S LD
Sbjct: 154 IPMPYAHYTDN--MYHAKPVNRPNFLPREGTPPPFAQQPAEQFSPFNSEYESLLD 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,680
Number of Sequences: 5004
Number of extensions: 42308
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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