Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5n02
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0486 - 29729333-29729356,29729856-29730106,29730364-297304...    32   0.38 
07_03_0967 - 23023019-23023158,23023676-23023767,23024474-230247...    30   2.0  
02_01_0667 - 4958924-4959523                                           29   4.7  
02_01_0278 - 1851338-1851412,1851579-1851819,1851946-1852047,185...    29   4.7  

>01_06_0486 -
           29729333-29729356,29729856-29730106,29730364-29730466,
           29730571-29730663,29730773-29730905,29731184-29731272,
           29731385-29731553,29731930-29732016,29732388-29732506,
           29732554-29732706
          Length = 406

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 543 VSGR*PRFACVLCAARATNTSTCASVANV*RQAGRPRPAPSPDGDGYSRRECGAATS 373
           +SGR   F C LC  +  N+ TC    +      +PR        G++RR C  +T+
Sbjct: 340 ISGR-AHFRCRLCGGKGHNSRTCGKPKSENECQRQPRHCSQCGERGHNRRNCPRSTT 395


>07_03_0967 -
           23023019-23023158,23023676-23023767,23024474-23024720,
           23024822-23025134
          Length = 263

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 528 PRFACVLCAARATNTSTCASVANV*RQAGRPRPAPSP 418
           P FA  L AA A   +  AS+    + AGRP P P P
Sbjct: 23  PAFAAALAAAAAAAAAAAASLTLTAKSAGRP-PLPHP 58


>02_01_0667 - 4958924-4959523
          Length = 199

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 519 ACVLCAARATNT--STCASVANV*RQAGRPRPAPSPD-GDGYSRRECGAATS 373
           A V+ A  AT++  ST  S     R    PRP P P   DG  R +CG++ S
Sbjct: 95  AAVVAARPATSSLSSTVESFGTRPRPVLPPRPPPPPPIPDGDCRSDCGSSAS 146


>02_01_0278 -
           1851338-1851412,1851579-1851819,1851946-1852047,
           1852291-1852364,1852455-1852592,1852848-1853003,
           1853364-1853513,1853808-1853867,1853946-1854073,
           1854209-1854617,1855571-1855628,1856435-1856493,
           1857478-1857606,1857765-1857774,1858134-1858183,
           1858633-1858854
          Length = 686

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 230 YKVGIFIV-VSTWKVRDFSRFQLKMNYYLKQKSQTGREYADHINC*LKTRKNIYFTK 63
           Y V + IV V TW++R F + ++ ++      +   R+  +  NC ++T    +FT+
Sbjct: 130 YSVELSIVGVRTWELRSFMKDEIFVHDRSNDSNMEARDDMNQWNCAMRTSDMEFFTE 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,160,693
Number of Sequences: 37544
Number of extensions: 302017
Number of successful extensions: 1058
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)