Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5n02
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical ...    30   1.4  
AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z30423-10|CAA83014.1|  216|Caenorhabditis elegans Hypothetical p...    29   3.2  
AF016658-3|AAB66042.2|  146|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical
           protein Y47D9A.5 protein.
          Length = 425

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 352 ASNASDRPGLSSDCECNNSYFCSVTYNACIQTKILSLQRT 233
           +SN S + G+S +C C  S+F +   +  I   I  L+ T
Sbjct: 79  SSNKSSKKGISINCYCAKSFFAACLSSTIIAESIYQLKNT 118


>AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical
           protein Y73B3A.3 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 236 YRYKVGIFIVVSTWKVRDFSRFQLKMNYYLKQKSQTGREYADHINC*LK-TRKNIYFTK 63
           YRY    F + S  K   FS  + + NY +  + +T  EY  H+N  ++ T+K+I  T+
Sbjct: 527 YRYLPTEFTIFSLGKC--FSICKKQQNYLINTEFETSEEYLTHLNQLVQNTKKSIPITE 583


>Z30423-10|CAA83014.1|  216|Caenorhabditis elegans Hypothetical
           protein T20G5.12 protein.
          Length = 216

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 581 NDFRVEIS-MSIKLLADANHASHVCC 507
           ND +  I+  SI+LL + NH  HVCC
Sbjct: 65  NDTKTPITEKSIQLLTNPNHLFHVCC 90


>AF016658-3|AAB66042.2|  146|Caenorhabditis elegans Hypothetical
           protein B0047.2 protein.
          Length = 146

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 263 PNEDLIASTYRYKVGIFIVVSTWKVRDFSRF-QLKMN-YYLKQKSQTGREYADHI 105
           PNE +I    +Y++ + I  STWKV   ++  QLK    Y K    T  +  D +
Sbjct: 89  PNEKIIRLADQYRLEMLINKSTWKVDSLAKLRQLKNTPEYEKLSGDTKAKILDRL 143


>AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical
           protein F56H1.3 protein.
          Length = 1174

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +1

Query: 178 EKSRTFQVETTMKIPTL*RYVEAIRSS 258
           EK++ FQ +TT+K+ T+ +YVE + SS
Sbjct: 423 EKNKRFQ-KTTLKLETIEQYVELLGSS 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,601
Number of Sequences: 27780
Number of extensions: 269256
Number of successful extensions: 744
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)